Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03050 ATGCTGCTTCACATTCGCTCAATTTTTGGGGAGGAGGCTACCTTTGCTAATGAAAAGATGAGTTCATTCTCCATCACACGGAAAAAGACGCCATTCCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCGGAAGATGAGACTGCACGCTTGTATGCTGAATTTGTAGAGTCATTTCAAGGGGATCATGCTCCTGGGTCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCCAATGAAAAATTGAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTACGTACCATCTTTTATACCACCTCCATTGGCAACCAAGGGGAAGGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGAAAGTCAAGGAACATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGAACGTGAACATTGGCGTGATGGACGTCATGGAGAACATTCTACTTCCAGCCGTTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGGAAACTTCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTATGTTGGAAACCTCTCACCAAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTAGCTTTCATGAACAGAGCCGATGGACAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCTCCACCCGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACCGTGATCTTGTCTGGCCCATCAGGTCCACCAGTAACGTCTGTGCCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATATTCCTGATATAATGGTTACGCCTCCTGAGGATGAACATCTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTCGAACAAGCTATTATGGAGAGGGGCCGTGGAAATCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCGAAGGAACATACCTACTATGTTTGGAGACTCTACTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAACGGGCAGTGGAAGATGGATTCCTCCCCCATTACCGACAACGAAGAGCCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAACCTGAAAGAACACTGACTGATTCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAACGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTGACAGAATCCTTGACACTTCGAGAAACACCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCGTATCGCACCAAGTTTGAAGCAACGTTACCTGACATTATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTCCTTCGATCTGGGAACTCTGGTGTAACACCATTCCATTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAGGTTGCTTCTGAAGATACAGTTGTTGGTGGCAAGACCGACCAAGATGCAGCATTGGCAATGGGTCGAGGAGCTGCAACGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTAGATGATGAATTAAAATATGGTCACAACCAAGCAAGTTCAGGGAAATATTCAAGTAGTAGGCGAGAAACAAGTGCCGAGCCTGAACCAGTGGGATTGTCTGGATGGAACCACTATGGGGATGAAGATTTGCGATTGCAAGGCAAAGGATCTGTACCTTTAGCGCCATCCCTTCCTATTCCACAGCCTGAACTCAAAGCCTTCACTAAAAAGGAGAAGAATGATCCAGTTTTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAAGGAGAAGTGGGAAAAATCTTGGATTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGCGATGATCTTGTTAAAGCTGATGAATCAGAGTCTGCTGCCGATACAAGTTTTTCTGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTGATTGAATATCGTGAGTCCCTTGAAGAGAGAGGAATTAAAAATTTGGAGGAAATTGAAAAGAAAGTCCTGATGCACCGGAAAAGGCTGCAAGCGGAGTACGGGTTATCAGATTCCGGTGAAGATGGTCAAGGCAGTAGAAGAACGTCTTCAGAGAGGAGGGATAGGCATGATTTCTCAAGGAAACGGCACCGTAGCCGTAGTCCAAGCGGTAGTCCACAACATAGATCAGGCAAAGACAGAGATAGAGAACATGATTCAGAAAGGGAACGAGACAGACAGAGAGATAGAAGTCATGATTTTGATAGTGATAGAGGAAGGGAGCGGCACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGAAAAGGATAGAAGCAGGGACAGGGACAGGAGAAGACGGACCAAATAA 2970 0.4485 MLLHIRSIFGEEATFANEKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDHAPGSKAFVRGGTINPNEKLKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHGEHSTSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNIPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPTTKSPEHEKESGSTHAGGRSRRVEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLRETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIEQKVASEDTVVGGKTDQDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYGHNQASSGKYSSSRRETSAEPEPVGLSGWNHYGDEDLRLQGKGSVPLAPSLPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQRRSGKNLGLSYSSSGSENVGDDLVKADESESAADTSFSAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVLMHRKRLQAEYGLSDSGEDGQGSRRTSSERRDRHDFSRKRHRSRSPSGSPQHRSGKDRDREHDSERERDRQRDRSHDFDSDRGRERHREKSGSRERDDHEKDRSRDRDRRRRTK* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03050 989 Coils Coil 865 885 - -
Rops2g03050 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 286 IPR000504 GO:0003723
Rops2g03050 989 MobiDBLite consensus disorder prediction 26 48 - -
Rops2g03050 989 SMART rrm1_1 206 282 IPR000504 GO:0003723
Rops2g03050 989 MobiDBLite consensus disorder prediction 926 982 - -
Rops2g03050 989 MobiDBLite consensus disorder prediction 700 843 - -
Rops2g03050 989 MobiDBLite consensus disorder prediction 30 48 - -
Rops2g03050 989 SUPERFAMILY ENTH/VHS domain 464 605 IPR008942 -
Rops2g03050 989 MobiDBLite consensus disorder prediction 765 797 - -
Rops2g03050 989 MobiDBLite consensus disorder prediction 429 465 - -
Rops2g03050 989 CDD RRM_SR140 204 287 IPR035009 -
Rops2g03050 989 Gene3D - 838 889 - -
Rops2g03050 989 SUPERFAMILY RNA-binding domain, RBD 198 293 IPR035979 GO:0003676
Rops2g03050 989 PANTHER RNA PROCESSING PROTEIN LD23810P 19 922 - -
Rops2g03050 989 ProSiteProfiles SAP motif profile. 656 690 IPR003034 -
Rops2g03050 989 SMART 558neu5 469 604 IPR006569 -
Rops2g03050 989 MobiDBLite consensus disorder prediction 80 99 - -
Rops2g03050 989 ProSiteProfiles CID domain profile. 462 607 IPR006569 -
Rops2g03050 989 MobiDBLite consensus disorder prediction 436 465 - -
Rops2g03050 989 Coils Coil 467 487 - -
Rops2g03050 989 MobiDBLite consensus disorder prediction 64 200 - -
Rops2g03050 989 SUPERFAMILY Surp module (SWAP domain) 327 409 IPR035967 GO:0003723|GO:0006396
Rops2g03050 989 Gene3D - 463 609 IPR008942 -
Rops2g03050 989 MobiDBLite consensus disorder prediction 710 724 - -
Rops2g03050 989 MobiDBLite consensus disorder prediction 798 812 - -
Rops2g03050 989 Coils Coil 36 56 - -
Rops2g03050 989 Gene3D Surp module 340 409 IPR035967 GO:0003723|GO:0006396
Rops2g03050 989 Coils Coil 839 859 - -
Rops2g03050 989 Pfam Surp module 352 404 IPR000061 GO:0003723|GO:0006396
Rops2g03050 989 Gene3D - 116 288 IPR012677 -
Rops2g03050 989 MobiDBLite consensus disorder prediction 884 989 - -
Rops2g03050 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 279 IPR000504 GO:0003723
Rops2g03050 989 ProSiteProfiles SURP motif repeat profile. 354 397 IPR000061 GO:0003723|GO:0006396
Rops2g03050 989 MobiDBLite consensus disorder prediction 118 188 - -
Rops2g03050 989 SMART surpneu2 352 406 IPR000061 GO:0003723|GO:0006396
Rops2g03050 989 Pfam CID domain 469 597 IPR006569 -
Rops2g03050 989 SMART cwf21_2 838 887 IPR013170 -
Rops2g03050 989 CDD cwf21_RRC1-like 838 887 IPR047491 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03050 Rops-Chr2 54778804 54804140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03050 202 282 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.00e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03050 K12842 - gmx:100776093 1689.47