Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03047 ATGGAAAAAATGGAATCATCTGCAAAGTATGATCCTGATGCCAGCAGGGATGAGCCAGGTTCATTTCGGGTATTCGAACTGCCAGAGAGTCAGCAAGAAGATGGTAAAAAAGTTGCAAAATTGGATGCAAGTTGGGTGGCAGCTCCCTCTAATTCTGGAAGCAGTAAGGAATCTATGAACAAGTGGATGGCATTTACTAATAAGTCTGATTTCACATTTGATGGAAACTCTAAAACAAAGGATCCTTCTGCTGACAATGACCTGAAGAATCATCTAAATGGACAGTCATCTTCTGATCATCAAATTTTAACTGAAGCAGCCATAGCTCAGAGAACTGCTGAATGGGGTCTTGTGATGAATTCAAGCAATTTTAAAGCAAACTCTTTTGATGGTGACAGAAACAAAAGCTTGTCAGATAGGTTTGTTGAATCAACAAGGACTTCTGGGGAGTCTAGTTATGGGTCAGAGTTAGCAGCAGGGATGTTCCCAAGGGTGTCACAAGAGTTGAAGGAAGCATTGGCCACACTGCAACAGACATTTGTTGTCTCAGATGCTACCAAACCAGACTGCCCAATCATGTATGCCAGCAGTGGCTTTTTTAGTATGACTGGTTATTCTTCAAAGGAGGTCATTGGAAAGAATTGCCGATTTCTTCAGGGGCCTGATACAGACATGAATGAAGTGGCAAAAATTCGGGATGCAGCTAAAAATGGAAAAAGTTATTGTGGCAGGCTTTTAAACTACAAGAAAGATGGAACTCCATTTTGGAATCTTCTCACTATCACTCCCATTAAAGATGACCATGGCAATACTATCAAATTCATCGGAATGCAGGTTGAGGTGAGCAAGTATACAGAAGGCTTGAATGAAAAGGCATTAAGACCAAATGGATTGCCAAAGTCATTAATTCGTTATGATGCTCGTCAAAAAGAGAAAGCTATGGGTTCAATGACTGAGGTTGTCCAAACTGTTAAGAACCCAAAATCCATTATTCGGGCTATGAATGATGACACTGCCTCCACCAAGCATGAAGAGCAAGAGAAATTGAATTATGATTTTGTTTTGCCAAAGTCTATTCAAACTGGGAATACTAGTAGCAGTACACCTGGTAGACAAACTTCATTGAACTTCCAAGGTGGCACCATGTCACGTTTTAGTTCTTATGAAGAAAGGAGCAAGACGTCAAGAAAATCAGCAAGGGTTTCTTTCAAGGGTTTTAAAGGGAGATCTATGAGTTCTGTAGGGAGTGATAAGGAGAAGTCCATTATTGAACCTGAGATTTTGATGACCAAGGAAATTGAGTGGCCCAACAGTTGGGAGGGTTCTCTAAGAGAGAGGGATATAAGGCAGGGCATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATAACCCAATTATATTTGCTTCTGACAGCTTTCTTGAACTTACAGAATATACACGAGAAGAAATTTTGGGTCGAAACTGTCGGTTTCTTCAAGGACCAGAAACAGATCGGGCAACTGTTGCAAAGATTAGAGATGCTATTAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAGCCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTGGATGGAAGTGATCATGTTGAACCCTTACAAAACCGCCTTTCTGAGAGAGCTGAGCAACAAAGTGCTAAGTTGGTTAAAGCCACTGCAGAAAATGTAGATGAAGCTGTTCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCTGTCTTTCCACGACCTCACAAAAAGAACAATCCTTCTTGGGTTGCAATACAAAAGATACTTGCAAGAGGAGAAAGAATTGGCCTGCATCATTTTTTGCCCATAAGGCCATTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCCAAGGTACTGGAGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGCTAAATCGTAATAAGGTTCATCGAGCATGCATTGAGAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCGGACTTCTACACATGTATGTTTGATTACTGACTTCTGCCCTGGGGGAGAATTGTTTGCATTGCTTGACAAGCAACCGATGAAGATTTTCAGAGAAGAATCTGCAAGATTCTATGTAGCAGAGGTTGTTATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATATCCTACTTCAGAAGGATGGCCATGTTGTATTAACTGATTTTGATCTATCATTTATGACAGCTTGTAAACCCCAGGTTGTGAAGCATGCACCACCTAGTAATAAAAGATCACGAAGTCAACCACCACCTACATTTGTTGCAGAGCCTGTTACACAATCAAACTCATTTGTTGGAACTGAAGAATACATAGCCCCTGAAATTATAACTGGAGCTGGGCATACTAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTCTATGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCCAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAGCCAATCGACTAGGTTCAACTACTGGAGCCAATGAAATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGCAATATGAGTCCACCCCCGTTAGATGTTCCTCTTCAATTGATAGGAAAAGATCCAAAGGCAAAGGATTTCAACTGGGAAGATGATGGGGTGCTTGTTAGCTCCATTGATATGAATATTTTTTGA 2961 0.4066 MEKMESSAKYDPDASRDEPGSFRVFELPESQQEDGKKVAKLDASWVAAPSNSGSSKESMNKWMAFTNKSDFTFDGNSKTKDPSADNDLKNHLNGQSSSDHQILTEAAIAQRTAEWGLVMNSSNFKANSFDGDRNKSLSDRFVESTRTSGESSYGSELAAGMFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGKNCRFLQGPDTDMNEVAKIRDAAKNGKSYCGRLLNYKKDGTPFWNLLTITPIKDDHGNTIKFIGMQVEVSKYTEGLNEKALRPNGLPKSLIRYDARQKEKAMGSMTEVVQTVKNPKSIIRAMNDDTASTKHEEQEKLNYDFVLPKSIQTGNTSSSTPGRQTSLNFQGGTMSRFSSYEERSKTSRKSARVSFKGFKGRSMSSVGSDKEKSIIEPEILMTKEIEWPNSWEGSLRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDRATVAKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLQNRLSERAEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKNNPSWVAIQKILARGERIGLHHFLPIRPLGCGDTGSVHLVELQGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPTLYTSFRTSTHVCLITDFCPGGELFALLDKQPMKIFREESARFYVAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTACKPQVVKHAPPSNKRSRSQPPPTFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPANRLGSTTGANEIKQHPFFRGINWPLIRNMSPPPLDVPLQLIGKDPKAKDFNWEDDGVLVSSIDMNIF* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03047 986 SMART pac_2 527 569 IPR001610 -
Rops2g03047 986 SMART pac_2 242 284 IPR001610 -
Rops2g03047 986 CDD PAS 473 565 IPR000014 -
Rops2g03047 986 CDD PAS 192 281 IPR000014 -
Rops2g03047 986 FunFam LOV domain-containing protein 650 734 - -
Rops2g03047 986 MobiDBLite consensus disorder prediction 360 379 - -
Rops2g03047 986 MobiDBLite consensus disorder prediction 813 831 - -
Rops2g03047 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Rops2g03047 986 Coils Coil 574 594 - -
Rops2g03047 986 SUPERFAMILY PYP-like sensor domain (PAS domain) 186 278 IPR035965 -
Rops2g03047 986 SMART pas_2 452 521 IPR000014 -
Rops2g03047 986 SMART pas_2 167 236 IPR000014 -
Rops2g03047 986 PANTHER FLIPPASE KINASE 1-RELATED 161 953 - -
Rops2g03047 986 FunFam Putative LOV domain-containing protein 735 949 - -
Rops2g03047 986 Pfam Protein kinase domain 654 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03047 986 NCBIfam PAS domain S-box protein 192 282 IPR000014 -
Rops2g03047 986 NCBIfam PAS domain S-box protein 476 568 IPR000014 -
Rops2g03047 986 ProSiteProfiles PAC domain profile. 524 578 IPR000700 -
Rops2g03047 986 Pfam PAS domain 473 565 IPR000014 -
Rops2g03047 986 Pfam PAS domain 186 282 IPR000014 -
Rops2g03047 986 MobiDBLite consensus disorder prediction 73 97 - -
Rops2g03047 986 Gene3D PAS domain 440 603 - -
Rops2g03047 986 MobiDBLite consensus disorder prediction 1 59 - -
Rops2g03047 986 SUPERFAMILY PYP-like sensor domain (PAS domain) 469 565 IPR035965 -
Rops2g03047 986 CDD STKc_phototropin_like 649 960 - -
Rops2g03047 986 FunFam Putative LOV domain-containing protein 179 335 - -
Rops2g03047 986 ProSiteProfiles PAS repeat profile. 165 238 IPR000014 -
Rops2g03047 986 ProSiteProfiles PAC domain profile. 239 293 IPR000700 -
Rops2g03047 986 SUPERFAMILY Protein kinase-like (PK-like) 627 963 IPR011009 -
Rops2g03047 986 ProSiteProfiles PAS repeat profile. 450 523 IPR000014 -
Rops2g03047 986 Gene3D PAS domain 179 353 - -
Rops2g03047 986 FunFam LOV domain-containing protein 439 603 - -
Rops2g03047 986 ProSiteProfiles Protein kinase domain profile. 651 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03047 986 Gene3D Phosphorylase Kinase; domain 1 650 734 - -
Rops2g03047 986 Gene3D Transferase(Phosphotransferase) domain 1 735 951 - -
Rops2g03047 986 ProSitePatterns Protein kinases ATP-binding region signature. 657 680 IPR017441 GO:0005524
Rops2g03047 986 SMART serkin_6 651 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03047 986 MobiDBLite consensus disorder prediction 809 831 - -
Rops2g03047 986 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03047 Rops-Chr2 54696348 54726970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03047 72 985 AGC Kinase Gene Family AT5G58140 72.252 0.0 1323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Rops2g03047 Pkinase 8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03047 K20715 - gmx:100804783 1633.23