Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03036 ATGGATTCTCTCCTCTCTCTTCAAACCCCTTCTAGTAGCTTCTCAAGCATTTCTACCCAAACCCCCAACACAGTCATTCCCTTCGGAGCCTCACTCCCAGGTAACTTATTGGTTCCCAAGCCGGAACCTTTTGATGAATTCTTCCAGACCCAACAAAAACCACAAACCCATGACGGGTCGGATTCTGAACCCGATTTGTACTCCGAATTCTATCGGGTCTCAGAACTCTTCCGAGCTGCTTTCGCCGGCACCTTGCCACAGCAGTTCATACTCGATGACGTGGACACTCCCCCTGACCCAAACCCGAACCCGACTTCCCAGCTCGGAGATGGCAGTGTTTCGAACCCGGACATGGATGTTGACCTGGATGGAAACGAGGTCGTTTCGGACCAGAACTCGCGAGCAATTGTTCCTGTGCCGGAAACGAAGAATGAGTCTTCTTCGGCCGTGACAACAACAGCAGTGAAGCGAAGACAGAGCCGTGTGAAGGAGCTGGTTAGGGTAACGGATCTTGACGCTAGGGATCATTTACATTTTCGTGAGGAATTGAGAAGGACAAGGATGATCTATGAATCCCTGCGTGTGTTAGCCACCATTGAAGAAGAAGAGGAGAGGAAGAAAGCTGCCACCATTATCGCTGCTGGTGGCGACCAAATTCCTGATGGCAACAGGCGGCGCATAAGGGGAGACCTGAAAGCTGCAGCACTGTTGAGGGAGCGAAGATTATGGTTGCATCGCGATAAGCGAATAGTTGGAGCAATTCCTGGGATTTATGTTGGTGATTTGTTCCTTTTTAGAATGGAATTGTGTGTGGTTGGGTTACATGGTCAGATTCAAGCTGGGATTGATTATCTTCCTGGTTCAATGAGTCCCAATGGTGAACCAATAGCTACTAGTGTTATTGTTTCTGGTGGTTATGAGGATGATTTGGATGATGGTGAGGTTATAATCTACACTGGTCATGGAGGGCAAGAGAAGAATTCATCAAGGCAAGTTTCTAATCAGAAGTTGGAGGGAGGGAATCTTGCTTTGGAGAGAAGTATGCGCTATGGGATTGAGGTTAGGGTTATTAGAGGGATGAGGTATGAAGGGAGTGCTTCGAGTTCGGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTGTTGATTGTTGGTTTGATATGGGGAGGTCTGGTTTTGGTGTTTATAAGTATAAGCTTTGGAGGATTGAAGGGCAAGCTAAGATGGGTAGTGCTATTTTGAAAGAAGCTAGGGATGTTAGGAGAAAGGGGTTGGATTTTAAACCTATGTATTATCTTTCTGTTGATATTTCAAACAAGAAGGAGAATGTTGGTGTGAGGCTTTTTAATGACATTGATGACAATAGGGATCCTCTTTGTTTTGAGTATCTTCCAAGGACTACCTTTCCGCAGTTTGTGTTTCATCAAAGTGGGAAAGCTACTGGTTGTGATTGTGTGAATGGTTGTGCTGATGGCTGCTTTTGTGCTATGAAAAACGGGGGCGAGTTTCCTTATAACCAACAGGGGTTTGTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCGTTTTGCAGTTGTCCTCCTAATTGTCGGAATCGTGTTACGCAAAAAGGGCTGAAGAACAGGTTGGAAGTGTTTAGGTCTCAGCAGACGGGTTGGGGAGTTAGGTCCTTGGACCTTATTCATGCTGGCGCTTTTATCTGTGAGTATACAGGGGTTGTTTTGACTAGAGAGCAAGCACAAATTTTGACAATGAATGGTGACTCATTGATATATCCTAATCGGTTTTCGGAAAGATGGGCGGAATGGGGAGATGTATCTCAGATATACCCTGATTATGTGCGTCCATCATATCCATCAATCCCTCCTTTGGATTTTTCTCTGGATGTGTCATCAATGAGGAATGTTGCTTGCTATATGAGCCATAGTTCATCTCCAAATGTATTTGTTCAGTTTGTTTTGTATGATCATAACAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCCATATGTAACTGA 2097 0.4502 MDSLLSLQTPSSSFSSISTQTPNTVIPFGASLPGNLLVPKPEPFDEFFQTQQKPQTHDGSDSEPDLYSEFYRVSELFRAAFAGTLPQQFILDDVDTPPDPNPNPTSQLGDGSVSNPDMDVDLDGNEVVSDQNSRAIVPVPETKNESSSAVTTTAVKRRQSRVKELVRVTDLDARDHLHFREELRRTRMIYESLRVLATIEEEEERKKAATIIAAGGDQIPDGNRRRIRGDLKAAALLRERRLWLHRDKRIVGAIPGIYVGDLFLFRMELCVVGLHGQIQAGIDYLPGSMSPNGEPIATSVIVSGGYEDDLDDGEVIIYTGHGGQEKNSSRQVSNQKLEGGNLALERSMRYGIEVRVIRGMRYEGSASSSGKVYVYDGLYRIVDCWFDMGRSGFGVYKYKLWRIEGQAKMGSAILKEARDVRRKGLDFKPMYYLSVDISNKKENVGVRLFNDIDDNRDPLCFEYLPRTTFPQFVFHQSGKATGCDCVNGCADGCFCAMKNGGEFPYNQQGFVVRGKPLIFECGPFCSCPPNCRNRVTQKGLKNRLEVFRSQQTGWGVRSLDLIHAGAFICEYTGVVLTREQAQILTMNGDSLIYPNRFSERWAEWGDVSQIYPDYVRPSYPSIPPLDFSLDVSSMRNVACYMSHSSSPNVFVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03036 698 MobiDBLite consensus disorder prediction 1 20 - -
Rops2g03036 698 ProSiteProfiles YDG domain profile. 252 402 IPR003105 -
Rops2g03036 698 Pfam SAD/SRA domain 251 406 IPR003105 -
Rops2g03036 698 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 118 686 - -
Rops2g03036 698 SMART preset_2 434 526 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops2g03036 698 ProSiteProfiles SET domain profile. 542 685 IPR001214 GO:0005515
Rops2g03036 698 Pfam SET domain 553 685 IPR001214 GO:0005515
Rops2g03036 698 SMART set_7 542 691 IPR001214 GO:0005515
Rops2g03036 698 SUPERFAMILY SET domain 427 697 IPR046341 -
Rops2g03036 698 Gene3D SET domain 411 698 IPR046341 -
Rops2g03036 698 Pfam Pre-SET motif 437 534 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops2g03036 698 SUPERFAMILY PUA domain-like 233 415 IPR015947 -
Rops2g03036 698 SMART G9a_1 247 406 IPR003105 -
Rops2g03036 698 Gene3D - 249 410 IPR036987 -
Rops2g03036 698 MobiDBLite consensus disorder prediction 90 122 - -
Rops2g03036 698 ProSiteProfiles Pre-SET domain profile. 481 539 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops2g03036 698 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 74 698 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03036 Rops-Chr2 54206788 54211729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03036 153 687 Su(var)3-9 homologs AT5G04940 36.590 1.06e-103 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops2g03036 SAD_SRA 5.1e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03036 K11420 - gmx:100785015 966.452