Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03012 ATGTATGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGTGCATGGCACAGTGATAACAGGTCCATCAGAAGACTGCTTCTCCCAAATTGTTTCAGAGTCAGAACCACCACTGCAGGCTGTTATTACTGGCACTGCAACAGAGACCAACAGCAACTTTGCAGAGAATGTGGGTCTTTCTGTGGAAAACTTACCATTCCCATATTCCTGTGGGGAAGATGCTATAACTGTTACTTCTTCTACCCTTACAAATAGAGTTTCTGCTTCTGTTGCCACTGCTGCAATGGACATCACTGCACTTCCCCAGCAAATGGGTTTTCACATGGAAAATCCATACAATAATGGCAATATCTTCAACACCAATCTGGTAGAAGAGGTCAATAACAACAATAATGGTTCAAGTCAAGACCTTTCCTTTCAACAGTCCAACTGGGACACTTCAAAAATGCAGAGGGTTTACAACAATCATCATCCTCACCAAAATCAGCAGGATCAGCAATTTCCTTATCCCACACCAACACCAGATCTCCTTAACCTTCTCCACTTGCAAAGAAGCCCAGTTTCCCCATTTGGGAACTCCTCTCTCTCTTTTGAAAACCCAGCCCACAACACCACCACCACCAACAATCTTTCAAAACCCTCAAGCCATGCCACCTGGATTGTTAGCTGCCCAATGGGGGCAGAAAGCACAAACATTTCCTCTGTTTCCTATGACCCATACTTGCATTTGAACCAGCAAGCACCTCCACCAGCTGCTGCACTCAGAGAGTTGTTTCAGCCTCCACCCCATGGCTACACCATGCCAGCTTCAAGAAATGATTTTGTCTTTGGTGAAGGGGATGACATGGAAGGCAGTGGGGTTGCCTATCAAGATGGAGATGGGAGAGATTTTGGTAATGGAGGGGGACTAGAGTTCACCCAGGATGTGACTTATGTTGGTAAAAAGAGAGGAGGGAAAAGGACCAAGCAGTTTACCAGTACCACTGAGAAACAAAGGAGAGTGGATTTGAGTAGCAAATTTGATGCCTTGAAAGAACTCATCCCAAACCCTTCCAGGAGTGATAGAGCATCTGTGGTGGGAGATGCTATTAACTATATCAAAGAACTTCAAAGGACAGAGAACGAGCTCAAATTTTTGGTGGAGAAGAAAAGGCACGAGAAACAAAGGATCAAGAGACACAAGATGGAACAAGGTGCCACTGAAGGTGACTTGGATGGCAGCAACTCTAATCTGGTTGCAATTGGCGACCTAGATGACCATTCATACAATGAAAGCTTGAGAAGTTGTTGGATCCAAAGGAAATCCAAAGACACTGAGGTTGATGTACGCATTATTGACAATGATGTTACAATAAAGCTTGTTCAAAGGAAGAAGATCAATTGTTTGGTGTTTGCTTCACGGGTTCTTGATGAACTTGAGCTGGATCTCCAACATGTTGCTGGTGGCCATGTTGGCGATTTCTGCAGCTTTATGTTCAATAGCAAGATATGTGAAGGTTCCTCAGTTTATGCGAGTGCCATAGCCAACAAACTCATTGAGGTAATGGACAAAAGTTTAGCAGCAGCATGA 1572 0.4415 MYEESGCFDPNAMMVHGTVITGPSEDCFSQIVSESEPPLQAVITGTATETNSNFAENVGLSVENLPFPYSCGEDAITVTSSTLTNRVSASVATAAMDITALPQQMGFHMENPYNNGNIFNTNLVEEVNNNNNGSSQDLSFQQSNWDTSKMQRVYNNHHPHQNQQDQQFPYPTPTPDLLNLLHLQRSPVSPFGNSSLSFENPAHNTTTTNNLSKPSSHATWIVSCPMGAESTNISSVSYDPYLHLNQQAPPPAAALRELFQPPPHGYTMPASRNDFVFGEGDDMEGSGVAYQDGDGRDFGNGGGLEFTQDVTYVGKKRGGKRTKQFTSTTEKQRRVDLSSKFDALKELIPNPSRSDRASVVGDAINYIKELQRTENELKFLVEKKRHEKQRIKRHKMEQGATEGDLDGSNSNLVAIGDLDDHSYNESLRSCWIQRKSKDTEVDVRIIDNDVTIKLVQRKKINCLVFASRVLDELELDLQHVAGGHVGDFCSFMFNSKICEGSSVYASAIANKLIEVMDKSLAAA* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03012 523 SMART finulus 327 376 IPR011598 GO:0046983
Rops2g03012 523 Pfam Helix-loop-helix DNA-binding domain 328 371 IPR011598 GO:0046983
Rops2g03012 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 391 IPR036638 GO:0046983
Rops2g03012 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 370 IPR011598 GO:0046983
Rops2g03012 523 PANTHER TRANSCRIPTION FACTOR BHLH91 1 522 IPR045895 GO:0006355|GO:0048658
Rops2g03012 523 CDD bHLH_AtMYC1_like 326 386 IPR045896 -
Rops2g03012 523 Gene3D - 316 380 IPR036638 GO:0046983
Rops2g03012 523 Coils Coil 363 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03012 Rops-Chr2 53693505 53695322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03012 1 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 33.395 5.13e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g03012 HLH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03012 - - vra:106767981 456.832