Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03011 ATGTCAACACCGTCACCGTCTCCGGTGTCATCCACCGCCGTGCCACTACCACAACCACCACAGCTTTCTTCCCCTGCACCTGGCTGTTCAACTTCACCAACACCATCTCAGTCCCCACCTGCTCCATTGTCACCTTCAACACTACCACCACTGTCAACTCCTGTACCTCCATCATTGCCACCACAGTCGCCGGTGCCGGAAAGTTCACCAACTCCGGTATCGGTGCCCCCTGAAAATTCACCCTCAGCTGTGCCCCCTCTGAGGTCTTCTCCACCACCTGCATCAATCCCTCCTCAAAATTCACCTCCTTCTCCATCATTTTCTACACCTCTGAGTAGTGCACCACCTCCTACTAGGATAAGTTCTCCTGATTCTCAATCTATGCCATCACCCAAATTTAGATTGGCTCCACCACCTCCATCATCACAACATGTATTAGGAAATTCAAGCCCTGGAGGTGGTGGTGGCAATGGTTCTGGGGGTGCTTTGCCTATTGGTATAGTGGCAGGAGTTCTATTGCTTGGCTTCATTGGCATTGCTATCTGGTGCCTGAGGAGGCAAAAGAAAAGGGTGTCTAAGCATGGTGGTTATGTCAAGCCATCCCCTCTTTGCTCATCACCTGAGTCAGAGTGGTCCATTTTGAAGACACGTTCTACTCCTCCTCTTGTACAAGGCGGTTCTGGCAGTGATAATGTGAATACACCATCAGGATTAGGCAACTCAAGGTCATGGTTTACATATGAAGATTTAATGAAGGCCACAAATAATTTTTCAATTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTGTGTGTATAAAGGATACCTTCCTGATGGAAGAGCGGTAGCAGTCAAACAGCTGAAAATTGAAGGAGGTCAGGGTGAGAGAGAATTCAAAGCTGAAGTTGAAATCATTAGTCGCATACATCATCGACATTTGGTTTCCTTAGTGGGATACTGCATTTCAGATAATAGAAGACTGCTTGTCTATGACTATGTCCCCAACAATACCCTTTACTTTCATCTTCATGGGGAAGGTAGGCCAGTTCTTGATTGGGCAAACCGTGTTAAAATTGCTGCAGGTGCGGCTAGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAATCATCAAACATTCTTTTGGATTACAACTTTGAAGCTCGAGTCTCGGATTTTGGGCTGGCCAAATTAGCACTTGATGCAAATACACATGTAACCACACGTGTCATGGGAACTTTTGGATATGTTGCCCCTGAATATGTATCAAGTGGAAAATTGACTGAGAAGTCAGATGTATATTCTTTTGGAGTCATGCTTTTGGAGCTCATAACAGGACGGAAGTCAGTAGATATATCCCAACCAGTTGGAGAAGAGAGTCTAATTGAATGGGCTCGACCTTTGCTAAGTCATGCACTTGATAATGAGGAATTTGAGAGTTTGATAGATCCAAAGCTAGGAAAGAACTATGTTGAAAGTGAAATATTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCAATATTCATCTACCAAAAGACCTCGCATGGGACAGGTGTTGAGAGCATTTGATAGTTTGGCTACTTCTGACCTAACAAATGGATTGAGAGTAGGGGAAAGTGAGGCGTTTGATTCGGCACAGCAATCTGCAGAAATAAGATTATTTCGTAGAATGGCATTTGGAAGTCAAGATTATAGCTCAGATATTTTTAGGCAGATTAGTTTGAATACCTAA 1755 0.4433 MSTPSPSPVSSTAVPLPQPPQLSSPAPGCSTSPTPSQSPPAPLSPSTLPPLSTPVPPSLPPQSPVPESSPTPVSVPPENSPSAVPPLRSSPPPASIPPQNSPPSPSFSTPLSSAPPPTRISSPDSQSMPSPKFRLAPPPPSSQHVLGNSSPGGGGGNGSGGALPIGIVAGVLLLGFIGIAIWCLRRQKKRVSKHGGYVKPSPLCSSPESEWSILKTRSTPPLVQGGSGSDNVNTPSGLGNSRSWFTYEDLMKATNNFSIQNLLGEGGFGCVYKGYLPDGRAVAVKQLKIEGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNNTLYFHLHGEGRPVLDWANRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFEARVSDFGLAKLALDANTHVTTRVMGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKSVDISQPVGEESLIEWARPLLSHALDNEEFESLIDPKLGKNYVESEIFCMIEVAAACVQYSSTKRPRMGQVLRAFDSLATSDLTNGLRVGESEAFDSAQQSAEIRLFRRMAFGSQDYSSDIFRQISLNT* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03011 584 SMART serkin_6 257 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03011 584 FunFam Proline-rich receptor-like protein kinase PERK8 229 332 - -
Rops2g03011 584 PRINTS Proline rich extensin signature 45 66 - -
Rops2g03011 584 PRINTS Proline rich extensin signature 70 86 - -
Rops2g03011 584 PRINTS Proline rich extensin signature 33 45 - -
Rops2g03011 584 PRINTS Proline rich extensin signature 3 19 - -
Rops2g03011 584 Pfam Protein kinase domain 259 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03011 584 SUPERFAMILY Protein kinase-like (PK-like) 234 528 IPR011009 -
Rops2g03011 584 Gene3D Phosphorylase Kinase; domain 1 228 332 - -
Rops2g03011 584 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 171 565 IPR047117 -
Rops2g03011 584 MobiDBLite consensus disorder prediction 1 157 - -
Rops2g03011 584 Gene3D Transferase(Phosphotransferase) domain 1 333 547 - -
Rops2g03011 584 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
Rops2g03011 584 ProSiteProfiles Protein kinase domain profile. 257 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g03011 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Rops2g03011 584 FunFam proline-rich receptor-like protein kinase PERK8 333 544 - -
Rops2g03011 584 CDD STKc_IRAK 263 533 - -
Rops2g03011 584 MobiDBLite consensus disorder prediction 113 129 - -
Rops2g03011 584 MobiDBLite consensus disorder prediction 10 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03011 Rops-Chr2 53672564 53677201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03011 136 577 Trihelix Transcription Factor Family AT5G38560 62.306 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Rops2g03011 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03011 - - vun:114173712 723.391