Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03004 ATGTCAACACTGAACCACCTTTCTGATCTTCCTGAACAAATATGTTACGTACAATGTGGATTCTGTACCACTATATTAATGGTAAGTGTCCCAAGCAGCAGTTTGTCAACAGTGGTGACAGTTAGATGTGGGCACTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCCTTTATCCCTTTCCATCTTTTAGCTTCCCTTAGTCATGTTGAGCAAAAAGATGGTAGTTCAGAAGAGGATGCAAACAAGACTTTGAACAGACATAATGCATCCATGATGACCCTTTCTGATTGTGAGGAAGAGAATGTGATTCAAGTGACCACTGTAGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCTTCAGCTTATAACTGTTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTCAAAATCCGGATATGGCTCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCCATCTCAGTGTAAAGGAGATCAAGACAACTGTAGCCACACAGAGGAACTAGTGGATCTGGACTCCCAAGTAGAGCCTCATGATGCTGAGGTCAATGAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGTTCCAAGGAATTCCATTTTGGCAAGGACCCCGTTTGAATGA 648 0.429 MSTLNHLSDLPEQICYVQCGFCTTILMVSVPSSSLSTVVTVRCGHCTSLLSVNMMKASFIPFHLLASLSHVEQKDGSSEEDANKTLNRHNASMMTLSDCEEENVIQVTTVVNKPPEKRQRTPSAYNCFIKEEIKRLKAQNPDMAHKEAFSTAAKNWANFPPSQCKGDQDNCSHTEELVDLDSQVEPHDAEVNEEGQGFRGRKVPRNSILARTPFE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03004 215 MobiDBLite consensus disorder prediction 187 215 - -
Rops2g03004 215 Gene3D High mobility group box domain 108 180 IPR036910 -
Rops2g03004 215 PANTHER PROTEIN YABBY 6-RELATED 2 175 IPR006780 GO:0007275
Rops2g03004 215 SUPERFAMILY HMG-box 109 163 IPR036910 -
Rops2g03004 215 CDD HMG-box_SF 120 163 - -
Rops2g03004 215 FunFam Axial regulator YABBY 4 107 175 - -
Rops2g03004 215 Pfam YABBY protein 11 162 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03004 Rops-Chr2 53410608 53412514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03004 2 215 C2C2-YABBY Transcription Factor Family AT1G23420 59.471 1.84e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops2g03004 YABBY 1.7e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03004 K25796 - gmx:100806755 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03004 2 53410608 53412514 Rops2g03004 2 53410608 53412514 ECH
Rops1g00841 1 20655236 20656997 Rops2g03004 2 53410608 53412514 PCT