Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02998 ATGGCGATGAAACGAAAACGAGGCGAAGATGAGTCGACGTCATTGAACCAGGAGGTGGTTCCCCTAGTGAGGTCGCTGATGCGCCACCAGCTTGAAAATATATTGGAAGAGGCGTCTAAAAGACACGAGGATGTCATGCAGATGGTCACATCCATGGTAGCTGTTTCGAAGAGAAAAATCTTTATCAGGGGCCTATCAAGAGAAGCAGGGAACTTGGATGTATATACTGTTTTCTCTGTTTATGGAGAAATTGTTGACTGCTACGTTGTGTATGACACGTCAACCCACAGGTCGAAAGGTTTTGCGTTTGTTATCTTTAAAGAAGACGAAAGTGCTGAAAGATCGCTTGTGGAACCGCGTAAAATAATAAAAGATCGGGTGACAATGGCTGTTCTTGAATCGGAGAGAGACAAGAGCAAGGAATCTCAAGAAAGACACAGGACGGTGTTCGTCAAACACGTTCCTTTTGCAATTTCAGCAAGGGATCTACTCCAGAGATTCCAGAAATATGGGCCCATAGATATGGGTCCTCTTGGTTTCGAAATTGATTCTGCTAAAGAAACCGGCTATGCGCTTTTTGTCTTCACAACCATGGAGGGGGTTCATAAGTGCTTAGAAAATCGCTGGAAGGAAATTAAGGGTTACAAAGTTTATTGCGAAATCGCAAAGAGGTAA 675 0.437 MAMKRKRGEDESTSLNQEVVPLVRSLMRHQLENILEEASKRHEDVMQMVTSMVAVSKRKIFIRGLSREAGNLDVYTVFSVYGEIVDCYVVYDTSTHRSKGFAFVIFKEDESAERSLVEPRKIIKDRVTMAVLESERDKSKESQERHRTVFVKHVPFAISARDLLQRFQKYGPIDMGPLGFEIDSAKETGYALFVFTTMEGVHKCLENRWKEIKGYKVYCEIAKR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02998 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
Rops2g02998 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 224 IPR000504 GO:0003723
Rops2g02998 224 Gene3D - 132 224 IPR012677 -
Rops2g02998 224 SUPERFAMILY RNA-binding domain, RBD 58 219 IPR035979 GO:0003676
Rops2g02998 224 SMART rrm1_1 59 132 IPR000504 GO:0003723
Rops2g02998 224 SMART rrm1_1 148 220 IPR000504 GO:0003723
Rops2g02998 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 217 IPR000504 GO:0003723
Rops2g02998 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Rops2g02998 224 Gene3D - 2 128 IPR012677 -
Rops2g02998 224 PANTHER GEO13361P1-RELATED 44 222 - -
Rops2g02998 224 Coils Coil 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02998 Rops-Chr2 53309863 53310537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02998 55 136 C2H2 Transcription Factor Family AT2G19380 37.805 9.33e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02998 K12741 - atr:18442167 138.272