Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02985 ATGGAGGAAATGTATGGAATGCCGTCGGTGACGGCGGCGGAGTACTCGGACAAGGCGGTGGTGATGCCAGAGAGTCTGATATTCCCGGCGGCAGAGTACCACAACCACTTGATGTCTTCCGGCGGTCGGATTCCGATGTTCGGATCTGGCGAGTTGTTCTCCGCCGCCGTCACCGAAACCGAACCCTCCGCCAACAATATCATTCCCGAAATTCAACGCTACCATGACGCTTCCTCTTCTCTCATCAAAGCTAAAATCGCTTCTCACCCTCACTACCCTCGCCTCCTTCAAGCCTACATCGATTGCCAAAAAGTAGGAGCGCCTCCAGAAATTGCGTGTTTGTTAGACGAAATCCGGCGAGAAAACGACGTTTGCAAGAGAAATGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAACTTGATGTGTTCATGGAAACCTACTATGAGTTGCTGGTGAAATATAAATCTGATCTGATGCGGCCTTTTGATGAAGCTACAACCTTCCTCAACGAGATCGAAACTCAGCTCTGCGATCTCTGCTCTGGTGCTTCCCTTTCCGATGATGGGGGTGTATCTTCAGAAGAAGGTTTTAGTACTGGAGATGGTGATACCCAAGATGGTCAATTACGGGTTGAAGATCGAGAGCTTAAGGATAGGCTTTTACGCAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAGTTTTCAAAGAAGAAAAAGAGGAGTCAGCTACCCAAAGACGCAAGGCAAAAACTGCTTCAGTGGTGGAATATGCACTACAAATGGCCTTACCCGACGGAAGGTGATAAGATAGCGCTGGCCAAGTCAACTGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCTGAGGATATGCAGTTTACCATGATGGATAATAATCTCACCGGACGGTTCCATAGTGTTGAATGA 960 0.475 MEEMYGMPSVTAAEYSDKAVVMPESLIFPAAEYHNHLMSSGGRIPMFGSGELFSAAVTETEPSANNIIPEIQRYHDASSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLDEIRRENDVCKRNVVSTCFGADPELDVFMETYYELLVKYKSDLMRPFDEATTFLNEIETQLCDLCSGASLSDDGGVSSEEGFSTGDGDTQDGQLRVEDRELKDRLLRKFGSHIGSLKLEFSKKKKRSQLPKDARQKLLQWWNMHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSEDMQFTMMDNNLTGRFHSVE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02985 319 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Rops2g02985 319 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Rops2g02985 319 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Rops2g02985 319 CDD homeodomain 238 299 IPR001356 GO:0003677
Rops2g02985 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 306 - -
Rops2g02985 319 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Rops2g02985 319 Pfam ELK domain 215 236 IPR005539 GO:0003677
Rops2g02985 319 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Rops2g02985 319 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Rops2g02985 319 SMART HOX_1 237 302 IPR001356 GO:0003677
Rops2g02985 319 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Rops2g02985 319 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Rops2g02985 319 SMART ELK_2 215 236 IPR005539 GO:0003677
Rops2g02985 319 Gene3D - 234 308 - -
Rops2g02985 319 SUPERFAMILY Homeodomain-like 236 308 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02985 Rops-Chr2 53014965 53022389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02985 1 319 Homeobox Transcription Factor Family AT1G23380 64.565 1.85e-139 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops2g02985 KNOX2 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02985 - - gmx:100803730 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00829 1 20206042 20213393 Rops2g02985 2 53014965 53022389 PCT