Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02975 ATGACTTCTAAGCCCGCGTGTGCTGCGTGTAAGTATCTCAGAAAGAAATGCACTGCAGGATGTGAATTTGCTCCATATTTCCCTTCAGATAATATGCAAAGGTTTGAATCTATTCACGGTGTTTTTGATGTAACCAACTTAAGAAGAATGTTGAAAGAGATAGATTCAAGGCAGCATGACTCAGCAATCGAGTCTCTGGTTTTTGAGGCGGAAGCACGGCTGAAAGACCCTGTTCAGGGTTGCTATGGGCTGATGCAAAGCCGTGTCAGCCAGCTCGAAACACAACTAGAAAATACTCGTACAGAGCTTGCGAAATTAATAACCCTCTTCCCACAGGCCATCCAGTATGTGACCAACCCCGGTGATATCTTAATGACACATCACAATATCCCACAACCGTCGTTGGTTTTGGCAGACCAGGCTGACACGCAGATGATTATTACGGATCCAGGACAGCAGCAAGCTCCTGCTTCTATGGCTCGAGAGGAACAACAACGGCAGTTGCTGAGTTCGAACAGTGGGTTCCTTGGTAGGTTCAGCTCCACTTCTCAGGTGCCACCATCTTTGGATATGTCCAGCTTTCAAAATTTGAATCCTGATCAGATTATTAATCAAGGAGAGCAACACTTCAATCTTCCTTTAAACACTCCAATCGAGCAAGAGACACAGCAGTCATATCAACATTCAGAAACCCTTATCTGA 702 0.4501 MTSKPACAACKYLRKKCTAGCEFAPYFPSDNMQRFESIHGVFDVTNLRRMLKEIDSRQHDSAIESLVFEAEARLKDPVQGCYGLMQSRVSQLETQLENTRTELAKLITLFPQAIQYVTNPGDILMTHHNIPQPSLVLADQADTQMIITDPGQQQAPASMAREEQQRQLLSSNSGFLGRFSSTSQVPPSLDMSSFQNLNPDQIINQGEQHFNLPLNTPIEQETQQSYQHSETLI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02975 233 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Rops2g02975 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 162 - -
Rops2g02975 233 Coils Coil 82 109 - -
Rops2g02975 233 MobiDBLite consensus disorder prediction 172 196 - -
Rops2g02975 233 Pfam Lateral organ boundaries (LOB) domain 6 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02975 Rops-Chr2 52685235 52686760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02975 2 120 AS2 family AT5G66870 47.541 4.41e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops2g02975 LOB 7.3e-31 No_clan