LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02973	ATGATCACAACTATGGTTTCTTATACTCATCTTTTTTCTTTTCTTTTCCCAATGATAGCAACTTCATTTGTTAGAGTTTTTGCCTTTGAAGTTTCAATCAAAACAACTTATTTGTCTCCTTTAAATTGCTCTGCAAAGATCGGGGCATGTAATGCCTCACTCTACCACATTAGCCAAAATCATGAGATTGAAGAAATTGCCTCTTTTTACTCTGTTAATTCTTCTCAAATCAGTCCTATAATATATGGTACCAGACAAGATTACCTCATAACAGTAACTTGTTCTTGCAAGAACTCCAATGACCTTAGCGGATATTTCTATGATACAACCTACACAGTGAGGCCAAATGACACTTTTGTGAACATTTCAAACCTGATTTACAGTGGACAAGCCTGGCCAGTTAGTGGTATATTGCATCCAGATGATAATTTAACAATACATATTCCATGTGGGTGTTCAGAAAGTGACTCTCAAATAGTTGTCACCTACACGGTTCAGGAGAATGATACACCAACAACCATTGCTAAGCTGCTAAATGCTACACTGGCTGGCCTGCTGAGCATGAACAAAATTCTGGCTCAGAACCCTGCATTTATAGATGTTGGTTGGGTTCTGTTTGTTCCTAAGGAATTGAAAGGGCTTCCAATGTCCAACAAAGAAGTGTCGGCAGAAAGGAAACAAAAGTGGATAACAATCGTTGGCATCTTAGCGGGCGTGACATTACTTTCAATTATTTCAATTATCATTCTCATTCTCCGGATAAAGAAAGCTAATCAAATCAGCAAAGAAGATTCACTCGTTGTCTCTAAAAGCTCAATTGCCAATAGAAATATTTTCTCAAGGAAACTTAACCTTCACATGGAATATATGGAAGATGTAATGTCAATAGAATCAGAAAGACCAGTAATATATAACCTTGAGGAGATTGAAGAGGCTACAAATAACTTTGATGAAACTGGAAGAATTGGAAGTGGGGGATATGGGAGTGTGTATTTTGGAATGTTGGGGAAGAAGGAAGTTGCTGTGAAGAAGATGAGGTCTAATAAATCGAAAGAGTTCTATGCAGAACTCAAGGTCTTGTGTAAGATCCATCATATCAACATTGTGGAGCTGTTGGGATATGCCAGTGGAGAAGATCACCTCTATTTGGTGTATGAGTATGTTTCAAACGGATCTCTCAGTGATCATATTCATGATCCATTACTGAAAGGCTACCAGCCTCTTTCTTGGAGTGCCAGGGTTCAGATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGATTATACAAAAGCACGATATGTGCACCGAGATATAAAGACTAGCAATATTCTTCTTAATGAGAAGCTCAGAGCAAAGGTAGGAGATTTTGGACTTGCAAAGCTGGTAGACCGAACCAATGATGAAAATCTCATAGCAACAAGGCTTGTTGGGACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTGACCCCAAAAACTGATGTGTTTGCTTTTGGAGTGGTTCTGTCAGAGCTGTTAACTGGGAAACGTGCACTATTTCGAGACAGCCAAGACGCCACCAAAATGAAATCACTTATTACTGTGGTTAATAAAATATTCCAAGATGGTGATCCAGAGATTGCTTTAAAAGATGCCATAGATAAGAATCTTGAAGGTAGCTATCCGATGGAAGATGTCTACAAGATGGCAGAAATAGCTGAGTGGTGTTTGCAAGAAGATCCAGTGGAAAGGCCTGAAATGAGAGATACCATTGGCGCATTGTCCAAAATTGTGATGTCCTCAATAGAGTGGGAAGCATCACTAGGAGGAAACAGCCAGGTCTTTAGTGGGTTGTATGATGGACGATGA	1863	0.3945	MITTMVSYTHLFSFLFPMIATSFVRVFAFEVSIKTTYLSPLNCSAKIGACNASLYHISQNHEIEEIASFYSVNSSQISPIIYGTRQDYLITVTCSCKNSNDLSGYFYDTTYTVRPNDTFVNISNLIYSGQAWPVSGILHPDDNLTIHIPCGCSESDSQIVVTYTVQENDTPTTIAKLLNATLAGLLSMNKILAQNPAFIDVGWVLFVPKELKGLPMSNKEVSAERKQKWITIVGILAGVTLLSIISIIILILRIKKANQISKEDSLVVSKSSIANRNIFSRKLNLHMEYMEDVMSIESERPVIYNLEEIEEATNNFDETGRIGSGGYGSVYFGMLGKKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVELLGYASGEDHLYLVYEYVSNGSLSDHIHDPLLKGYQPLSWSARVQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLNEKLRAKVGDFGLAKLVDRTNDENLIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLSELLTGKRALFRDSQDATKMKSLITVVNKIFQDGDPEIALKDAIDKNLEGSYPMEDVYKMAEIAEWCLQEDPVERPEMRDTIGALSKIVMSSIEWEASLGGNSQVFSGLYDGR*	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02973	620	CDD	LysM	161	207	IPR018392	-
	Rops2g02973	620	Gene3D	Phosphorylase Kinase; domain 1	294	387	-	-
	Rops2g02973	620	FunFam	Kinase family protein	292	387	-	-
	Rops2g02973	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	435	447	IPR008271	GO:0004672\|GO:0006468
	Rops2g02973	620	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	35	614	IPR044812	GO:0019199\|GO:0045087
	Rops2g02973	620	FunFam	PTI1-like tyrosine-protein kinase 3	388	606	-	-
	Rops2g02973	620	ProSiteProfiles	Protein kinase domain profile.	316	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g02973	620	Pfam	Protein kinase domain	318	587	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g02973	620	SUPERFAMILY	LysM domain	161	208	IPR036779	-
	Rops2g02973	620	SUPERFAMILY	Protein kinase-like (PK-like)	298	589	IPR011009	-
	Rops2g02973	620	Gene3D	Transferase(Phosphotransferase) domain 1	388	605	-	-
	Rops2g02973	620	ProSitePatterns	Protein kinases ATP-binding region signature.	322	344	IPR017441	GO:0005524
	Rops2g02973	620	SMART	serkin_6	316	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g02973	620	Pfam	LysM domain	163	208	IPR018392	-
	Rops2g02973	620	SMART	LysM_2	162	208	IPR018392	-
	Rops2g02973	620	Gene3D	LysM domain	154	213	IPR036779	-
	Rops2g02973	620	ProSiteProfiles	LysM domain profile.	161	207	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02973	Rops-Chr2	52611661	52618014	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02973	40	620	Receptor kinase-like Gene Family	AT1G51940	37.363	4.91e-119	366

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Rops2g02973		Pkinase	9.7e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g02973	-		-	gmx:100791718	943.725