Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02964 ATGACTAGAAAGAAGGTGGAGCTTGCATACATAACCAGTGACTCTAAGAGGAAGGCAGCCCTCAGGAAAAGGAAGAATGGTTTGATCAAGAAGATTGATGAAATCAGCACTCTTTGTGGGATCGAATCATGTGCTATAATCTATAGCCCAAATGATCCTCAGCCACAAGTTTGGCCATCTCCTTCGGGAGTTCAAAGGGTGCTGTCCAAGTTCATGGCAATGCCTGAACTAGAACAAAGCAAAAAGATGTTGAATCAGGAGAGCCTCTTGGAGCAAAGGATTCTGAAAGCCCAAGAGCAGCTGAAGAACCAAAGGAATGACAATAGGATGAAAGAGATAACCCATCTTATATTTCAATACCTTAATGCTGGCCAGATTTTTGGCGATCATAGCATGGTTGATCTCAATGATCTATCATGGGTGATTGATCAAAACCTGAAGGAAATTGACAGGAGGATCAATCAGATCGAAGCTCCAGAGGCTGTTGAAGATGGAGCAGAAATTCAGAGTGGAGGAGAGCAAGCACCCATGGGACATGACCAAATGATGCAGACCAACGTGGACACCATGCAAAATCAACATTTGTCAATGGAGTTCATCAATTATGGTGTGCCACCATTTGGAGATGTCAATTTCCCAAATGTCCTCTAG 651 0.4332 MTRKKVELAYITSDSKRKAALRKRKNGLIKKIDEISTLCGIESCAIIYSPNDPQPQVWPSPSGVQRVLSKFMAMPELEQSKKMLNQESLLEQRILKAQEQLKNQRNDNRMKEITHLIFQYLNAGQIFGDHSMVDLNDLSWVIDQNLKEIDRRINQIEAPEAVEDGAEIQSGGEQAPMGHDQMMQTNVDTMQNQHLSMEFINYGVPPFGDVNFPNVL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02964 216 Coils Coil 87 107 - -
Rops2g02964 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops2g02964 216 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Rops2g02964 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops2g02964 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops2g02964 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops2g02964 216 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops2g02964 216 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Rops2g02964 216 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops2g02964 216 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Rops2g02964 216 PANTHER MADS BOX PROTEIN 3 153 - -
Rops2g02964 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02964 Rops-Chr2 52403700 52404472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02964 1 153 Type I MADS-box Gene Family AT5G48670 57.516 3.14e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops2g02964 SRF-TF 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02964 - - gmx:100813231 253.447