Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02963 ATGCGAAAGAAGGTGAAACTTGCTTTCATTGTCAATTATTCTGCTAGGAAGCTATCCTACAGAATAAGAAAAAAGAGTTTGATTAAGAAGATCAATGAACTCACTACCCTTTGTGGTATTGAGGCATGCGCTATTGTATATAGCGAATTTGATCCACAGCCAGAGGTTTGGCCATCCCCATGTGAGGTCGAAAGGAAAATCACCAAATTTTGGAATTATTCTGAATTTGAACAGGGCAAGAAGAAGCTGAACCAGGAGAACTATTTACAGCAAAGGATTCTAAAGGCCAAGGAGCAGTTGGTGAAAATGAAGAAGAACAATAGGGATAATAAGATTTCCTTCCTAATGTTTCAACTTCTTGCAGGACGAAATGTTATGGACAACCTGAACATGGTTGATTTGAATGATCTGTCATGGCTAATTGGTGAGAAGCTGAAGGAAATTAACTGGAAGATGGTTGAACTAGACGAGGCTGCAACAACTCAGAGCCGAGCTCAAGCGATATAG 507 0.3984 MRKKVKLAFIVNYSARKLSYRIRKKSLIKKINELTTLCGIEACAIVYSEFDPQPEVWPSPCEVERKITKFWNYSEFEQGKKKLNQENYLQQRILKAKEQLVKMKKNNRDNKISFLMFQLLAGRNVMDNLNMVDLNDLSWLIGEKLKEINWKMVELDEAATTQSRAQAI* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02963 168 FunFam Agamous-like MADS-box protein AGL80 12 97 - -
Rops2g02963 168 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Rops2g02963 168 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops2g02963 168 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 149 - -
Rops2g02963 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Rops2g02963 168 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Rops2g02963 168 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops2g02963 168 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02963 Rops-Chr2 52380399 52382218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02963 2 160 Type I MADS-box Gene Family AT5G48670 48.428 6.39e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops2g02963 SRF-TF 5.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02963 - - lja:Lj1g3v2809220.1 195.282