Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02945 ATGGAGGAAGCACTGAGGCTTCTCAACGGAATGTCCCCAATCAAAGAACCCGACGACCACGACTCTGGCTCCGACCACCACCGCCAGAAGAAGTGTGCCACCGCTGCCAACAAGAAGACCTCGCGTGAAAGCGGCGGCTCCGCCATTAGGTACCGCGGGGTCAGACGCAGGCCCTGGGGCCGTTACGCAGCCGAGATAAGGGACCCACAGTCAAAGGAGCGCCGCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCCTGTGCTTACGACTGCGCCGCCCGAGCCATGCGTGGTGCCAAAGCTAGAACCAATTTCGTTTATCCTGATGCCACTGAACCACACCTTTTCCATTCCTTTAATATTCCCAAGTTATCTCAGCACAATCATCATGTCAACAAGTTCATACAGAATCGTCATCTGAGTGCTTCTTCTTCCCATGGTGGTGAGGGTGTGCCTAACCCTTCTCTGAACATGCTTCTCTTTCGTGACTACATCAACTCTTCCTCAAACCCGTTTTTGGTTCCATCTTCTGCTCAGCAGTTTCACAACAAGGGAAATAGTTCTTGTTCTTCAATCCCTTCTTCGTCACAGACGTTGTTACCCAATTCTAGCTGTCTCCAAGGTTGCTGCTTGGTGAATTCTTCTGCGGGCAACGCTAATATACAACACGGTTGTGGTGTTTTTTCGGAAGTCACTGATGCTATCGATGAAGACTCGGAGTTCTTTCCGAGAGAGTCTTCAGATTCTGGATTGTTGGAAGAGATAGTTAACAGGTTCATGACAAAATCAAAGTCAAAATCAAAGTCCGTGCCCAAGAATTGCGAGATTACACTGAAAGCAGAGACTAATTTATCCATTTCGGAGCTGTCATCACTTCCTCAACCAATATCTGCTGATCACGTGCTCCTTTCTTCCACTAGGTGCTATGATGATACGAGGACGAGACTTCCCATGATCGAGGGTTTTGGAACTGTCTCTGTTGATCAGCAAGGTTTCCCGATGCAGCAATTTGACACTCTTAATGGGTTTAACTTTAACACCCCGCAGGCTATGTCTATGGGAAGCGACCAGTTTATGATGAATCATGCAGAGTGCTCTATGATCGAAGATATTTTTCAGTATCCAGAACATTTTAATTCTTTTGCAGCCAGGATGCAAAATGCTTAA 1170 0.4803 MEEALRLLNGMSPIKEPDDHDSGSDHHRQKKCATAANKKTSRESGGSAIRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDATEPHLFHSFNIPKLSQHNHHVNKFIQNRHLSASSSHGGEGVPNPSLNMLLFRDYINSSSNPFLVPSSAQQFHNKGNSSCSSIPSSSQTLLPNSSCLQGCCLVNSSAGNANIQHGCGVFSEVTDAIDEDSEFFPRESSDSGLLEEIVNRFMTKSKSKSKSVPKNCEITLKAETNLSISELSSLPQPISADHVLLSSTRCYDDTRTRLPMIEGFGTVSVDQQGFPMQQFDTLNGFNFNTPQAMSMGSDQFMMNHAECSMIEDIFQYPEHFNSFAARMQNA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02945 389 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Rops2g02945 389 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Rops2g02945 389 MobiDBLite consensus disorder prediction 8 48 - -
Rops2g02945 389 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Rops2g02945 389 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 231 - -
Rops2g02945 389 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Rops2g02945 389 FunFam Ethylene-responsive transcription factor 2 50 108 - -
Rops2g02945 389 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Rops2g02945 389 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Rops2g02945 389 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Rops2g02945 389 MobiDBLite consensus disorder prediction 13 31 - -
Rops2g02945 389 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02945 Rops-Chr2 52116523 52117692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02945 1 265 AP2-EREBP Transcription Factor Family AT1G12980 39.636 1.26e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops2g02945 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02945 - - aprc:113860142 401.749