Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02932 ATGGGAGGAGCGAGTTACGACGACTCGCTGGTTAACCCATCCCGGGTCAAAATGCCGAGTCCCATGGAAGAACCAGCTGCTATGATGATGAGAAACAGTGGGAAAGGAAGGTACAGAGAGTGCCTCAAGAACCACGCGGTAAGCCTTGGAGGCCACGCGCTCGACGGTTGCCGTGAGTTCATGGCCGCTGGACCCGACGGCACACTCGACGCTCTCAAATGCGCTGCCTGTAACTGCCACCGGAACTTCCACCGGAAAGAAACGGTCGCCGGAGACCAGTTTCACCCCTTCCACCACCGCCTCCACCAGCCGCCGCAGTTCGCGGCGTGTTATCGGACTCCGGCTGGGTACTTGCACGTGGCTGGACCGCCGAGAGGGGCTGCCACTCTGGCACTGCCGTCAACATCTGGTGGTGGTGGTGGGACCCAGAGCACAAAGGAGGATCACGAAGATGTTTCGGACCCAAGTGGAGGAGGGTCAAACTCGAAGAAGAGGTTTAGAACCAAGTTCACGCAGGAACAGAAGGAGAAGATGCTTGGTTTTGCTGAGAGATTGGATTGGAGGATTCAGAAGCATGATGAGAGTGTGGTGCAGGAGTTCTGTAACGAAACTGGTGTCAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 681 0.558 MGGASYDDSLVNPSRVKMPSPMEEPAAMMMRNSGKGRYRECLKNHAVSLGGHALDGCREFMAAGPDGTLDALKCAACNCHRNFHRKETVAGDQFHPFHHRLHQPPQFAACYRTPAGYLHVAGPPRGAATLALPSTSGGGGGTQSTKEDHEDVSDPSGGGSNSKKRFRTKFTQEQKEKMLGFAERLDWRIQKHDESVVQEFCNETGVKRHVLKVWMHNNKHTLGKKP* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02932 226 SUPERFAMILY Homeodomain-like 150 224 IPR009057 -
Rops2g02932 226 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 28 222 - -
Rops2g02932 226 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 38 87 IPR006456 -
Rops2g02932 226 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g02932 226 NCBIfam homeobox domain, ZF-HD class 163 219 IPR006455 -
Rops2g02932 226 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 37 87 IPR006456 -
Rops2g02932 226 Pfam ZF-HD protein dimerisation region 37 88 IPR006456 -
Rops2g02932 226 MobiDBLite consensus disorder prediction 128 167 - -
Rops2g02932 226 Gene3D - 148 224 - -
Rops2g02932 226 FunFam Zinc-finger homeodomain protein 2 149 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02932 Rops-Chr2 51819534 51820214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02932 34 222 ZF-HD Transcription Factor Family AT4G24660 56.316 1.08e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops2g02932 ZF-HD_dimer 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02932 - - lja:Lj0g3v0229739.1 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00792 1 19465434 19466836 Rops2g02932 2 51819534 51820214 PCT