Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02911 ATGGATACAACTCAAACAGAAATAATTTATGTTGCAGTTGGCTGTGATGTAGATGGATTTCAAACTTTGCATTGGGCTATCAAGAAATGGAATTCACATCCAATATCTATTGTCATTCTACATGTGAAATACAACACTTCCAAGGATTTTGTTTATACTCTCCTTGGAAAACTCCCTGCAAAATCTGCCTGTGAAGAAAAACGGGAACTTATCAGGAAATATGAGCAAAATATAATCAACAAGCTACTTTCTAAGTATATAGCTTTTTGCGACAATGTGCCAGCTGAAACACTTGAGGTTGAGAAATTTGATGAACCAATACAGAGGCTCACCATAGACTTGATCCTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCTTACTTGAAATCGAAAGATGTTATAAACGGATTGTTCTATGTTTATCAACACAAGCCTGCCTTCTGTGAATTGTTTATTATTCGTGAAGGGAAACAAGTTTCACCGCGAGTGAAGAATGATGAGATAATCATGGAGGATGATAATGGGGTCAAGGTCGCCAAAGTGAGAGATAAGATAAATTTTGTAGATTGCCTAGGGAGAATGTTCTCTGATAAATCCATTGACTCCTCAGATAGAAGTTCTTGTGGATCATTACTTTCTTCAACAAATTTGGAACCTTATCTTAACCAAGACCAGTGGGAAATTTATCTCCAAGAAATTGACAATTATTTACAGGAGCTACTGTCTTTAAATTTGGAGGAAGGAAGCTGTGGGCAAGACAATGACGTTTCCCACATTAGTCCAATTGAGCCATATGTCAAAGAACTTAGCAATTCCAATAATAAGAGTGCTGGAGAAAAAATTGAGATCCTCAAAGAAAAGCTGAATGAAGCTTACAAGACAATCCAAATGAATAGGAAAGAAGAAAAGGCCAATTTGGAGAGACATGCAAAAGCTGAATGGGCTATTTATTTATGCAACCGTCGGGAAGAAGAACTTGAATATCTAAAAAGTGAAGAAGTGAAAAGAAGGGAAGAACTTAAGAAGGAACTGAATGCAAAAGAAGAACAACTTCACAAAATTAGAATGGATGTTGAAGAGAGCAAGCGAAGGCTTAATTCACTGGCAGAGCTGCAATCAGAGCTCCTAAACAGGCTTCATATTTCAACATCGGCAGTGTCAGAACGTGAAACCCAACTAGGGAATGTAATGGCTGCAAGGAAAGAGACGCTAATGGAGATAGAAGAGCTGAGGAAACAAAGGGATGTGCTGAACAGAAGGATTGAGCTTTTCAAAGAAAAGGATGCCACAGGAGTGAGTGGTAAGCTAATAGAGAAGGGTTGTAATTTAAGGGAATACACGAAAGAGGATATTATCTTGGCCACCCACAATTTTTCGGAGCAGTTGAGGTTAAAATGTGGTGGAATTTGGAGTAACGTGTATAGGGGACACATTAACCACCTCACTGTTGCAATCAAGATGCTCAATTCTGTTTCTCACTTGTCCCAACAAGATTTCCAAGCTAAGGTGAGGTCTCTTGGTAGTATTCGGCATCCCCATCTGGTTGCTATGTTGGGCTTCTGCTCTGAGCCCAAATGCTTAGTTTTGGAGTACATGCACAATGGCAGCTTGGAAGAAATGCTATTTTGTAGGAGAAAAAGCCTGGCCTTAAGCTGGCATGACTGCATAAGGATAGCTATAGAAGTTTGCTCAGGGCTGGGCTTCCTAAATGCATTTAAGCCCAGGCCCATTATTCATTGTCACCCTTCTCCATCTAACATCCTCCTAGACCACAATCTTGTTGCAAAGATCATAGTGTTTGGGCTTCATGGGTGCAATGAAGAATGTAATGTTGAGTCAGATGTGAAGGCAATAGGGGTTTTGTTGCTGCATCTATTGACTGGAAGAAGAAAATGGGTGACAATGGATAGAGAAGGTTTATTTGATGAGATTGATAAACAATGGCCATTGGTTGTAGCAAGAGAATTTGTGGGTCTAGCAATGAGGTGCATGTCCATGGATTGTGAGCCCAATGATGAAATGAGCATAACAAGAGTCATGGAGGAACTCAATGAGATAAGAAGAAAGGGTGATGACATGGTTGCTAAGGAAGGATGGAGGGCTATAAATGATGGAAATGGAGATGGACAGGACTCCAGTGATGTGCCTAGTGTTTTCCTTTGCCCTATCCTTCAGAAGGTAATGAAAAATCCACACGTGGCAGGAGATGGATTTTCTTATGAGCTAGGAGCAATAGAAGGGTGGTTGCAATTGGGGAATGACATTATCACCCGAAAACCTGAGGCTGAACCACCCATTACTTACCCCTAA 2328 0.4025 MDTTQTEIIYVAVGCDVDGFQTLHWAIKKWNSHPISIVILHVKYNTSKDFVYTLLGKLPAKSACEEKRELIRKYEQNIINKLLSKYIAFCDNVPAETLEVEKFDEPIQRLTIDLILGLGITKLVMGFSFMKPYLKSKDVINGLFYVYQHKPAFCELFIIREGKQVSPRVKNDEIIMEDDNGVKVAKVRDKINFVDCLGRMFSDKSIDSSDRSSCGSLLSSTNLEPYLNQDQWEIYLQEIDNYLQELLSLNLEEGSCGQDNDVSHISPIEPYVKELSNSNNKSAGEKIEILKEKLNEAYKTIQMNRKEEKANLERHAKAEWAIYLCNRREEELEYLKSEEVKRREELKKELNAKEEQLHKIRMDVEESKRRLNSLAELQSELLNRLHISTSAVSERETQLGNVMAARKETLMEIEELRKQRDVLNRRIELFKEKDATGVSGKLIEKGCNLREYTKEDIILATHNFSEQLRLKCGGIWSNVYRGHINHLTVAIKMLNSVSHLSQQDFQAKVRSLGSIRHPHLVAMLGFCSEPKCLVLEYMHNGSLEEMLFCRRKSLALSWHDCIRIAIEVCSGLGFLNAFKPRPIIHCHPSPSNILLDHNLVAKIIVFGLHGCNEECNVESDVKAIGVLLLHLLTGRRKWVTMDREGLFDEIDKQWPLVVAREFVGLAMRCMSMDCEPNDEMSITRVMEELNEIRRKGDDMVAKEGWRAINDGNGDGQDSSDVPSVFLCPILQKVMKNPHVAGDGFSYELGAIEGWLQLGNDIITRKPEAEPPITYP* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02911 775 Coils Coil 280 311 - -
Rops2g02911 775 PANTHER OS02G0152300 PROTEIN 8 759 - -
Rops2g02911 775 Coils Coil 406 433 - -
Rops2g02911 775 Gene3D Phosphorylase Kinase; domain 1 448 537 - -
Rops2g02911 775 Gene3D Transferase(Phosphotransferase) domain 1 613 707 - -
Rops2g02911 775 Coils Coil 329 384 - -
Rops2g02911 775 Gene3D Transferase(Phosphotransferase) domain 1 538 612 - -
Rops2g02911 775 CDD UDM1_RNF168_RNF169-like 328 384 - -
Rops2g02911 775 SUPERFAMILY Protein kinase-like (PK-like) 448 675 IPR011009 -
Rops2g02911 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 769 IPR013083 -
Rops2g02911 775 Pfam Protein tyrosine and serine/threonine kinase 474 609 IPR001245 GO:0004672|GO:0006468
Rops2g02911 775 SUPERFAMILY RING/U-box 712 760 - -
Rops2g02911 775 ProSiteProfiles U-box domain profile. 720 775 IPR003613 GO:0004842|GO:0016567
Rops2g02911 775 ProSiteProfiles Protein kinase domain profile. 465 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02911 Rops-Chr2 51291863 51296391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02911 4 760 U-box Gene Family AT5G65500 46.710 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops2g02911 PK_Tyr_Ser-Thr 3.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02911 - - gmx:100795815 1055.05