Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02909 ATGGCTGGTGCTACTAACTGGCTTACGTTTTCGTTGACACCAAAGGAAATGCACTCACAGTTTGTTCAACAGGACACTTCCTCTCACTGCTTTGTTGATAACTTTTATGCCAATGTGTGGAAGTCTCAAGTGTTGAACCAAAACCAAGCACAGAGCTTGGCTGAACCATCAATTCTCACAGGTTTAATGGAGCCACAGAATGAAAACCAGCCACTTATGGTGCCTAAAATGGAAGATTTCTTTGATAGCCAAACAGAGATTCAAGATTCTTCTTCACTCACCCAAATTTACGACCATGTTTCTGCCTCTGCCTACTTCAGTGAACACCAGCAAGATCTGAAACCTGTTGCTGAGTTTCAAGTGTTTTCTGGCACTAACTCGGGCTCTGAGGTGGATGACTCGGCCTCCAACACCAAAACTCAAGTCACACCTGGTGAGTTGGGTGCTCACTCGGTTGAGTCTTCCAAGGGAACTTTGTCTCTTGGTGATGTTGCGCACAGTTCTGATGATAAGGCCATTGTTGCGGCTGATTCTGATAACTTGAAGAACATTCGTCATACCTTTGGTCAGAGAACTTCAATTTACAGAGGGGTCACAAGACACCGATGGACGGGCAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGAGAGGGTCAGGTCAGGAAAGGGCGTCAAGGTGGATATGACAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACAATCAGCTACTACTAACTTTCCTGTTTCCTATTATACAAAGGAACTGGAGGAGATGAAACATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTCTCGAGGGGAGCTTCCATATACAGGGGTGTTACAAGGCACCATCAACAGGGTAGATGGCAAGCAAGAATCGGTAGAGTTGCAGGAAACAAAGATCTATACTTGGGAACATTTACAACTGAAGAGGAAGCAGCAGAGGCATATGACATTGCAGCCATTAAGTTTAGAGGTGCAAATGCTGTAACCAATTTTGAGATGAATAGATATGATGTGGGGGCTATATTGAAGAGCTCTCTTCCAGTTGGGGGTGCAGCAAAACGCTTGAAGCTTTCACAAGAATCAGAGAAAAAAGCTCCTATGAATAATAGTCCACAACCTCACTGTACAAACGTGAGTAGTAGCATCAATTTCTCAACTATTCAACCAGTTGCTTCTATACCATATGATTATGCAACAGCATTTTATCCCCACAATCTCTTCCACCATTTTCATCCCACCAACGATGGCAGTGGCACAACAGAGTCTGCTACAACTATGACCAATGCAACCACACTGACTGCACTGCCAGCTGCAGCTGAGTTCTTTATATGGCCTCATCAGTCCCATTGA 1407 0.4442 MAGATNWLTFSLTPKEMHSQFVQQDTSSHCFVDNFYANVWKSQVLNQNQAQSLAEPSILTGLMEPQNENQPLMVPKMEDFFDSQTEIQDSSSLTQIYDHVSASAYFSEHQQDLKPVAEFQVFSGTNSGSEVDDSASNTKTQVTPGELGAHSVESSKGTLSLGDVAHSSDDKAIVAADSDNLKNIRHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQVRKGRQGGYDKEEKAARAYDLAALKYWGQSATTNFPVSYYTKELEEMKHVGKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFTTEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVGAILKSSLPVGGAAKRLKLSQESEKKAPMNNSPQPHCTNVSSSINFSTIQPVASIPYDYATAFYPHNLFHHFHPTNDGSGTTESATTMTNATTLTALPAAAEFFIWPHQSH* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02909 468 MobiDBLite consensus disorder prediction 125 153 - -
Rops2g02909 468 FunFam AP2-like ethylene-responsive transcription factor ANT 193 259 - -
Rops2g02909 468 SMART rav1_2 194 263 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 SMART rav1_2 293 357 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 SUPERFAMILY DNA-binding domain 193 259 IPR016177 GO:0003677
Rops2g02909 468 ProSiteProfiles AP2/ERF domain profile. 293 351 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 CDD AP2 193 259 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 PRINTS Ethylene responsive element binding protein signature 333 353 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 PRINTS Ethylene responsive element binding protein signature 195 206 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 ProSiteProfiles AP2/ERF domain profile. 194 257 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 CDD AP2 292 351 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 Gene3D AP2/ERF domain 194 259 IPR036955 GO:0003700|GO:0006355
Rops2g02909 468 Gene3D AP2/ERF domain 293 353 IPR036955 GO:0003700|GO:0006355
Rops2g02909 468 Pfam AP2 domain 194 249 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 Pfam AP2 domain 293 343 IPR001471 GO:0003700|GO:0006355
Rops2g02909 468 FunFam AP2-like ethylene-responsive transcription factor 292 353 - -
Rops2g02909 468 SUPERFAMILY DNA-binding domain 292 352 IPR016177 GO:0003677
Rops2g02909 468 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 71 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02909 Rops-Chr2 51229401 51234479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02909 55 468 AP2-EREBP Transcription Factor Family AT5G10510 51.544 2.86e-139 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops2g02909 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02909 K09285 - gmx:100777168 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00771 1 19092550 19097287 Rops2g02909 2 51229401 51234479 PCT