Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02894 ATGACACCACCGGATAACACACCTGCGAAAGATCATGAGAACCAAGGTTCTGATAACAGGAAAACAACAAAGCCACCAGAGCAAGGCCTAGTAAAGTGCCCACGATGTGATTCTCCTAACACAAAATTCTGCTACTACAACAACTACAGCCTCACTCAGCCAAGGCACTTCTGCAAGACTTGTCGAAGATACTGGACAAACGGTGGAGCCTTGCGTAACGTCCCAATAGGTGGTGGTTGTAGGAAGAACAAGAAGGTGAAAACGTCGTCGTCTTCATCTGCTTCATTATCTAGACTCTCATGTGACTCCAAGGACTCTGCTTCATCCTCTTCAGAGCTTGCTGGTCTTAGATTCTTTCATGGTATTAATTCACCTTCTATGGAATTTCAGCTTGGTGGGTTACCTTTACCTGCGAGGCTTCATCATCATCACCCTCCAATTACCACTGGTTTCTATAACCAGTTGTCTTCTTTTGGGTCTGCTTCTTCTGTCACAAATGCTTCCGGTTTCCAACTTGATCCCTCTGGTACCTCAGATTCTTTCATTGGTCTAAACTATCCGTTTTCTTCTTCAACTGAAAGTGAACTCAATGGTGCAATCCATGGCATGAATGTTAACAGTAGCCTTGCTTCTTCAATTGAGTCATTGAGTTCCATAAACCAGGACTTGCACTGGAAGCTGCAACAGCAACGATTAGCAATGATGTTTGGTGGAGATAACCAGAAAGATGGTACTAGTAGTGTTTCAGTTTCTCCTGCTAACCTTGAGAATCAGACCCAGAAGCTACAACCCATTTTGTTTCAGAACCTTGAGATTTCAAAGCCAGAGATTTTTCCAGCTAGTAATTCCAGAAAAGAAGGTCCAAGTGGGGATGCACCAACAGAATGGTTCTTTGGGAATTCTTATTCCTCAGTGACACCTACAACTAACAGCAGTGGTGGCAATGACCTTGATAATGCAAACAATAACTGGAGTAGTGGTGTCCATGTTTGGGGTGATGTGCAGCAACCTTATAGTACTTTGCCCTAG 1029 0.4373 MTPPDNTPAKDHENQGSDNRKTTKPPEQGLVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKTSSSSSASLSRLSCDSKDSASSSSELAGLRFFHGINSPSMEFQLGGLPLPARLHHHHPPITTGFYNQLSSFGSASSVTNASGFQLDPSGTSDSFIGLNYPFSSSTESELNGAIHGMNVNSSLASSIESLSSINQDLHWKLQQQRLAMMFGGDNQKDGTSSVSVSPANLENQTQKLQPILFQNLEISKPEIFPASNSRKEGPSGDAPTEWFFGNSYSSVTPTTNSSGGNDLDNANNNWSSGVHVWGDVQQPYSTLP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02894 342 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Rops2g02894 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 234 IPR045174 GO:0003700|GO:0006355
Rops2g02894 342 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
Rops2g02894 342 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Rops2g02894 342 MobiDBLite consensus disorder prediction 279 300 - -
Rops2g02894 342 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02894 Rops-Chr2 50803107 50804135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02894 4 342 C2C2-Dof Transcription Factor Family AT5G65590 38.547 6.79e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops2g02894 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02894 - - gmx:100777894 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01177 1 27432538 27434098 Rops2g02894 2 50803107 50804135 PCT