Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02887 ATGAGAAAAGCTAGGAAATGCGTTTGTAATTCTAAAGGTTCATTTTGTTCAGAGATGAAGATGAAGGTGGTGGGTAAGAAGAGCAAACATGTTTTCTTCCTTTGGTGGTTTGGAATGACTGTTAACCTCTGCTTCTTGCTGGGTGCCTGTTCTGAGAAGACATCATTTAGAAGAGGTTTAAGGGAAATCAACAACCTGGAACCAAGATCTTCTCCATCTGAGGTCAAGCTGAATACAGAAAACCAACAGCAGTTGGTGGTTGACAATGGCATTGTTTCTGTCACTTTGTCAAGACCTGAGGGCTACGTTCTTGGAATATCTTATAATGGAATTGACAATATACTTGAAGCTGAAAACGAAGAACAAGATAGAGGGTACTTCGATGTCGTTTGGAATGAGCCAGGAAAACCTAGTAACTTTCAAAGAATCCATGGGACAAATTTTTCGGTTATAGCAGCTGATGAAAATGTGGTGGAGGTCTCATTTTTAAGAACATGGACATCTTCCATGAATGGCTCAAATGTCCCCATAAACATTGACTTAAGATACATTTTTCGAAGTGGGGATTCAGGATTTTATTCATACGCGATATTCGATCGCCCTGAAGGATTGCCAGCAGTGGAGGTTGATCAAATTAGATATGTTTTCAAACTCAACAAAGACAGGTTCCACTATATGGCTATATCAGACAGCAGGCAAAGAATGATGCCAACAATGAAAGATAGAGAAACCGGTCAAATCCTGGCTTACCCTGAAGCAGTTCTTTTAACCAAACCAACTAACCCAGAACTTAGAGGAGAGGTGGATGACAAGTACCAGTACTCATGTGAGAACGCAGACAACACTGTTCATGGATGGATTAGTCTAGATTCTGATGCACCCGTGGGTTTTTGGGTGATTACACCTAGTAACGAGTTCCGAAATGCTGGGCCCATCAAGCAAGACCTTACTTCTCATGTTGGCCCCATCACACTCTCAATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTAACCATGGCATTTGAAGAAGGGGAGACTTATAAAAAGGTTTTTGGCCCTGTATTTGTCTATATTAACTCTGCTTCAGGCGAGAATGATACACTATCCCTCTGGTCAGACGCTGGGCAGCAGCTATCCAAGGAAGTCAAAAGCTGGCCTTACGATTTTCCTCGATCAGAAGATTTCTTCCCACCCAATCAACGGGGAACAGTATTTGGAAGATTACTAGTCCAAGATAGGAGCATCAAAGGAGGGAGATTTCAATATTCAAACAATGCTTATGTTGGCCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAAAGAAAGCAAGGGCTATCAATTCTGGACTAGAGCTGACATGAAGGGATACTTCGTAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGCATGGGTCCCTGGCTTCATTGGTGATTATAGATATAATGCTACAGTCACCATCACACCAGGAGGAGAAGTCAAATTGGATACACTTGTATATAGACCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGGTCCCAGATCGTTCTGCTGCAGAATTCTATGTTCCAGACCCCTACCCAACGCTCATGAACAAATTATACAATGAACAACGCAGAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATGTTGATTTATATCCAAATGATGATCTTGTTTACACTGTTGGTGTTAACAAGTATAATAAGGATTGGTTTTTTGCTCATGTTTCAAGAAGCACAGGAAATAAGACATATCAACCAACAACATGGCAGATTATATTTGATCATCGAAATGACATAATGAGCGGAAACTACACACTTCAACTGGCCTTGGCATGTGCTGCTGATGCTGACCTACAGGTTCGGTTCAATGACCCTAGTGCAAATCCACCCCACTTTGCAACAGGGCACATAGGAGGAGACAATGCCATAGCAAGGCATGGCATCCATGGATTGCATAGGCTGTTCAGCATTGATGTACCAAGTAATCTTCTTGTGAAAGGAAAGAACATCATTTATTTAAGGCAGTCAAGAGCAATAAGTCCTTTCCAAGGAGTAATGTATGATTATATCCGTTTAGAACGACCTCCAACTCTAACGACTTGA 2127 0.4175 MRKARKCVCNSKGSFCSEMKMKVVGKKSKHVFFLWWFGMTVNLCFLLGACSEKTSFRRGLREINNLEPRSSPSEVKLNTENQQQLVVDNGIVSVTLSRPEGYVLGISYNGIDNILEAENEEQDRGYFDVVWNEPGKPSNFQRIHGTNFSVIAADENVVEVSFLRTWTSSMNGSNVPINIDLRYIFRSGDSGFYSYAIFDRPEGLPAVEVDQIRYVFKLNKDRFHYMAISDSRQRMMPTMKDRETGQILAYPEAVLLTKPTNPELRGEVDDKYQYSCENADNTVHGWISLDSDAPVGFWVITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYINSASGENDTLSLWSDAGQQLSKEVKSWPYDFPRSEDFFPPNQRGTVFGRLLVQDRSIKGGRFQYSNNAYVGLALPGDAGSWQKESKGYQFWTRADMKGYFVINNVVPGDYNLYAWVPGFIGDYRYNATVTITPGGEVKLDTLVYRPPRNGPTIWEIGVPDRSAAEFYVPDPYPTLMNKLYNEQRRDKFRQYGLWERYVDLYPNDDLVYTVGVNKYNKDWFFAHVSRSTGNKTYQPTTWQIIFDHRNDIMSGNYTLQLALACAADADLQVRFNDPSANPPHFATGHIGGDNAIARHGIHGLHRLFSIDVPSNLLVKGKNIIYLRQSRAISPFQGVMYDYIRLERPPTLTT* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02887 708 CDD RGL4_M 401 501 IPR029413 -
Rops2g02887 708 Pfam Polysaccharide lyase family 4, domain III 511 700 IPR029411 -
Rops2g02887 708 SUPERFAMILY Starch-binding domain-like 397 501 IPR013784 GO:0030246
Rops2g02887 708 SUPERFAMILY Galactose-binding domain-like 508 701 IPR008979 -
Rops2g02887 708 Pfam Rhamnogalacturonate lyase family 73 268 IPR010325 -
Rops2g02887 708 Pfam Polysaccharide lyase family 4, domain II 425 497 IPR029413 -
Rops2g02887 708 Gene3D - 398 500 - -
Rops2g02887 708 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 76 704 - -
Rops2g02887 708 Gene3D - 77 375 IPR014718 GO:0030246
Rops2g02887 708 SUPERFAMILY Galactose mutarotase-like 79 363 IPR011013 GO:0003824|GO:0005975|GO:0030246
Rops2g02887 708 Gene3D - 508 701 - -
Rops2g02887 708 CDD RGL4_C 513 701 - -
Rops2g02887 708 CDD RGL4_N 78 368 - -
Rops2g02887 708 FunFam Rhamnogalacturonate lyase B 398 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02887 Rops-Chr2 50744029 50750975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02887 81 705 Polysaccharide Lyase AT1G09910 55.981 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02887 K18195 - gmx:100776664 1172.15