Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02876 ATGGAGCTTTCTCAACTTGGTTTTCTTGAGGAACTAGTAGTTCCAAGAAGAAACACATGGAATGCTTTGTCCACTGGGTTCAATGAGCTATTGTCTAGTGGTTTGAGCTTTGACTCTTTTGTTGAGAACCCAACTTTGGCTACTTCAAACTCCTCATTTGCTGCATTTCCAAACCCACTAGACCATGGATTTGAATGTCCTTACAGTAGTAGTGAAGCAGCATACCCTTTTGCGGATGGGTTCACAATGCCAGAGCTTGACTCATCATGCACCAGGAACAATGACCCAGCACCACTTCCAAAACAGGAACATAACCCATCAGTGGGGGATGAAGAGATTGACTTTCTAGTAAGTGATGACAAGAGTTTGGAAGAAAGAAAGAGTGACTGCAAAATTGAGGAACAAGTTATAGAGATTCCAGTCTTCAACATGGGCATGTGTGATGGAGAGAAAAAGCTCAAGTCCAAAAAGCTTGAAGGGCAGCCATCAAAGAATCTCATGGCAGAAAGAAGGAGAAGGAAGCGTCTGAATGACCGTCTTTCCATGCTAAGGTCTATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGATACCATTGACTACATGAAAGAGCTTCTGGAAAGGATTGGTAAGTTGCAAGAAGGAGAAGGGGAAGAGAGCATAAGTCAGATAAATCTCATGGGCATTTCAAAGGAACTCAAGCCAAACGAAGTAATTGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGATCAGAACACAAGGATTAGCATCTGCTGCGCTCCAAAGCCCGGATTGTTACTATCAACTGTGAATACTTTAGAAACATTAGGACTTGAGATTGAGCAATGTGTTATAAGTAGCTTCAATGACTTTTCAATGGAAGTATCTTGTTCTGAGGTAGCTGAACAGATAAATTGTATTAGCCCTGAAGAAATAAAGCAAGCACTATTCAGAAATGCAGGCTTTGGGGGGAGATGTCTCTAG 1002 0.4212 MELSQLGFLEELVVPRRNTWNALSTGFNELLSSGLSFDSFVENPTLATSNSSFAAFPNPLDHGFECPYSSSEAAYPFADGFTMPELDSSCTRNNDPAPLPKQEHNPSVGDEEIDFLVSDDKSLEERKSDCKIEEQVIEIPVFNMGMCDGEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEGEGEESISQINLMGISKELKPNEVIVRNSPKFDVERRDQNTRISICCAPKPGLLLSTVNTLETLGLEIEQCVISSFNDFSMEVSCSEVAEQINCISPEEIKQALFRNAGFGGRCL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02876 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 76 328 - -
Rops2g02876 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Rops2g02876 333 MobiDBLite consensus disorder prediction 86 110 - -
Rops2g02876 333 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Rops2g02876 333 Gene3D - 154 219 IPR036638 GO:0046983
Rops2g02876 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Rops2g02876 333 SMART finulus 166 215 IPR011598 GO:0046983
Rops2g02876 333 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02876 Rops-Chr2 50493070 50494690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02876 151 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.204 2.03e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02876 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02876 - - gmx:100806571 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01221 1 28116975 28118589 Rops2g02876 2 50493070 50494690 PCT