Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02873 ATGGTTGACTATTGTTATGCAGCAGGCAGGGCCAAGATTGTGCTTTGCTTCACCCTTATATGCACACTCCAAAGCTTTTGTTGCTTTGTGCTTAATGGAAGGCTCTTGAGCTTTTCTTTCTCTGTCTCTCTGCTCTTTAGGTTTCCCTCACCCCTCACCCCCTCTGCAAGACAGCTTCAACAAAGAAGAATAATCTCTCTTCTTCTTCACTCTCTCCTCTGCCAAACCAATCTTCCATTTCCATATAGTTTGTATATTTGGAGTCTGATGTCTCCACCACTGCTGGTTACTGAAGAGGAAGGGCAGAGCAATGCCTCAACAGTTGCATCTGCATCTTCACAAAATCTGGACTGTTTCTCCCAAAGTGGGGCTGGATTGAAAGAACGCAATTACCTGGGATTGTCGGATTGCTCATCGGTGGACAGTTCTACTGTCCCAAACTTTTCTGATAAGAAAAATAAGAACCTGAATTTGAAGGCTACAGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGAACCAGATCTTTTCCCATTGAGCTCGACAAAACTTGACGAGAAACCACTGTTCCCTTTGCTTCCTACAAAAGATAGAATCTGCTTATTGGCCCAGAAAACTGTGGTTTCAGGCAACAAAAGAGGTTTTGCTGATGCTATGGATGGGTTCCCTGAGGGGAAATTTCCTGGCAATGCAGGCATAAACATAATGCTATCTCCTAGACCTTCTGGAGCTCAGCCAAGCGCAATTAAAGAAATACCAAGCAAGGTGTTGCAAGAACGTCCTTGCGCAGCAAACGGAAATAACCATACAGGGGCTTCTAACAGTGGTAGTGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGAAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCGAGCTGCAAACTTTGTGAAGGTCAGCATGGATGGAGCTCCCTATCTTAGGAAGGTAGATCCAAGAAATTATACATCATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTATCCTAGGTCAATATGGTTCCCATGGAGCTCTGGGAAGAGACACGTCAAGTGAGAGCAAGCTGAAGGACTTCCTGCATGGTTCAGAATATGTGCTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCGTGGGATATGTTTGTTGACACGTGCAAAAGGCTGAAAATCATGAAGAGTTCTGATGCTATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAAGAGCAGGGACTGTTGA 1326 0.4495 MVDYCYAAGRAKIVLCFTLICTLQSFCCFVLNGRLLSFSFSVSLLFRFPSPLTPSARQLQQRRIISLLLHSLLCQTNLPFPYSLYIWSLMSPPLLVTEEEGQSNASTVASASSQNLDCFSQSGAGLKERNYLGLSDCSSVDSSTVPNFSDKKNKNLNLKATELRLGLPGSQSPEREPDLFPLSSTKLDEKPLFPLLPTKDRICLLAQKTVVSGNKRGFADAMDGFPEGKFPGNAGINIMLSPRPSGAQPSAIKEIPSKVLQERPCAANGNNHTGASNSGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGRAANFVKVSMDGAPYLRKVDPRNYTSYQELSSDLEKMFSCFILGQYGSHGALGRDTSSESKLKDFLHGSEYVLTYEDKDGDWMLVGDVPWDMFVDTCKRLKIMKSSDAIGLAPRAMEKSKSRDC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02873 441 Gene3D - 316 433 - -
Rops2g02873 441 MobiDBLite consensus disorder prediction 264 285 - -
Rops2g02873 441 ProSiteProfiles PB1 domain profile. 320 422 IPR000270 GO:0005515
Rops2g02873 441 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 156 427 IPR003311 GO:0005634|GO:0006355
Rops2g02873 441 MobiDBLite consensus disorder prediction 264 284 - -
Rops2g02873 441 FunFam Auxin-responsive protein 315 432 - -
Rops2g02873 441 SUPERFAMILY CAD & PB1 domains 320 421 - -
Rops2g02873 441 Pfam AUX/IAA family 161 431 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02873 Rops-Chr2 50432013 50440732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02873 318 425 B3 DNA Binding Superfamily AT1G19220 31.481 1.09e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops2g02873 AUX_IAA 7.4e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02873 K14484 - gmx:100500373 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01224 1 28157054 28163970 Rops2g02873 2 50432013 50440732 PCT