Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02860 ATGACTGAGTACCGGTCACCGCCGACGATGAATCTCTGGACCGACGACAACTCTTCCGTCATGGAAGCTTTCATGAGTTCCTCCGATCTCTCCTCCCTCTGGCTACCAACGCCGCATTCCGCCGCATCCACCACCACTCCGGGACCCGACCCGACCCGAGCCCCACCACCGCCGCCGCCGCAATCTCAGCCTGTGTTTAACCAGGATACTCTCCAGCAGCGGCTGCAGACGCTAATCGACTACGCAAAGGAGAGCTGGACCTACGCCATCTTCTGGCAACCCTCCTACGACTACTCCTCCGGCTCACCACTCCTCGGTTGGGGTGACGGTTATTACAAGGGCGAGGAGGATAAAGGAAAGGGCAAAACCATCAAAGCGACGTCGTCCGCTGAGCAGGACCACCGAAAGAAGGTTCTCCGTGATCTCAATTCCTTAATTTCCGGATCTTCAGCCTCAACCGACGATGCCGTTGATGAAGAAGTTACCGACACTGAGTGGTTCTTTCTCGTGTCGATGACTCAGTCTTTTGTTAACAGCAGCTGCCTCCCGGGCCAGGCTTACTTTAATTCCAGCCCGGTGTGGGTTGCCGGGCTCGACCGGTTATCTGGTTCGGGCTGCGAGCGGGCCCGACAGGGGCAGGTCTTTGGGCTTCAGACATTAGTATGCATACCGACACCTTCAGGAAACGGCGTCGTAGAGCTGGCATCCACGGAGGTAATTCCCCATAACCCTGATCTGATGAACAAGGTGCGGGTTTTGTTTAACTTCAACAACCTCGAAGGTGGTTCGTGGCCGTTGAATTCGAATTCTGTTACAACCGATCAGGGCGAGAATGACCCTTCCTCTCTCTGGCTCAACGATCCCTCTAGCGGGATCGAAATCAGGGATTCCGTTAATACCGTTGCTGCTGCGCCCGCTGCACCAGCTTCCACGAATACGACAGTTGGCAAGACCTTGCAGTTCGAAACTTCAAATTCTGTTCAAGTTCCCAACACTCATCGCCAGCAGAACCAGGGCTTGTTTCCGAAGGAACTGAACTTTTCGAGTTCTCTAAAGCCCGAATCCGGCGAGATTCTGAGCTTCGGGGAGAGCAAGAAGAGCTCTTACAGTGCCAATGGCAATTTCTTTTCCGGTCAGTCGCAGTTCGTTGCCGCAGAGGAGAACAAGAAGAGGAGATCCCCTGCTTCCAGGAGCACCGTTGACGATGGAATGCTCTCCTTCACTTCCGGTGTGATCTTGCCGGCGTCGAATTTGAAATCTGGTGCTGGCGGCGGCAGTGGGGATTCTGATCATTCGGATCTGGAAGCTTCTGTGGTAAAGGAAGCTGACAGCAGCAGAGTGATTGAACCGGAGAAACGACCTCGAAAGCGAGGGCGAAAACCGGCGAACGGTAGAGAGGAGCCGTTGAATCACGTTGAAGCAGAGAGGCAGAGGAGAGAAAAGCTGAATCAGAGGTTCTATGCTCTTCGCGCGGTGGTTCCTAACGTGTCAAAAATGGACAAGGCATCACTTCTAGGCGATGCCATATCTTACATAAACGAGCTGAAATCTAAGCTTCAGGGGATTGAATCCGCGAAAGGTGAATTGGAGAATCAATTGGATTCAGCAAAGAAGGAACTTGAGCTAGCAAGTAAAAATCCACCTCCACCAGATAATAATAACAAAGAAACGAAGACAAGCAAGCTGATTGATTTGGATATAGACGTGAAGGTCATTGGTTGGGATGCGATGATTAGGATCCAATGCAGCAAGAAGAATCACCCTGCGGCGAGGTTGATGGCTGCTTTGAAGGAACTTGACTTGGATGTGCATCATGCCAGCGTGTCCGTAGTGAACGATTTGATGATTCAACAGGCGACGGTGAACATGGGAAGTCGATTTTACACGCAGGAGCAGCTCCTGTTAGCACTCTCGTCCAAAGTTGGCGATGCACGATAG 1938 0.5237 MTEYRSPPTMNLWTDDNSSVMEAFMSSSDLSSLWLPTPHSAASTTTPGPDPTRAPPPPPPQSQPVFNQDTLQQRLQTLIDYAKESWTYAIFWQPSYDYSSGSPLLGWGDGYYKGEEDKGKGKTIKATSSAEQDHRKKVLRDLNSLISGSSASTDDAVDEEVTDTEWFFLVSMTQSFVNSSCLPGQAYFNSSPVWVAGLDRLSGSGCERARQGQVFGLQTLVCIPTPSGNGVVELASTEVIPHNPDLMNKVRVLFNFNNLEGGSWPLNSNSVTTDQGENDPSSLWLNDPSSGIEIRDSVNTVAAAPAAPASTNTTVGKTLQFETSNSVQVPNTHRQQNQGLFPKELNFSSSLKPESGEILSFGESKKSSYSANGNFFSGQSQFVAAEENKKRRSPASRSTVDDGMLSFTSGVILPASNLKSGAGGGSGDSDHSDLEASVVKEADSSRVIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGIESAKGELENQLDSAKKELELASKNPPPPDNNNKETKTSKLIDLDIDVKVIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVNMGSRFYTQEQLLLALSSKVGDAR* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02860 645 Pfam Helix-loop-helix DNA-binding domain 470 515 IPR011598 GO:0046983
Rops2g02860 645 SMART finulus 472 521 IPR011598 GO:0046983
Rops2g02860 645 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 469 535 IPR036638 GO:0046983
Rops2g02860 645 CDD bHLH_AtAIB_like 463 539 - -
Rops2g02860 645 MobiDBLite consensus disorder prediction 35 66 - -
Rops2g02860 645 Coils Coil 512 546 - -
Rops2g02860 645 MobiDBLite consensus disorder prediction 49 64 - -
Rops2g02860 645 FunFam Transcription factor bHLH13 459 533 - -
Rops2g02860 645 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 466 515 IPR011598 GO:0046983
Rops2g02860 645 MobiDBLite consensus disorder prediction 416 476 - -
Rops2g02860 645 PANTHER MYC 30 639 IPR045084 GO:0003700|GO:0006355
Rops2g02860 645 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 254 IPR025610 -
Rops2g02860 645 MobiDBLite consensus disorder prediction 433 476 - -
Rops2g02860 645 MobiDBLite consensus disorder prediction 323 347 - -
Rops2g02860 645 Gene3D - 458 545 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02860 Rops-Chr2 50197922 50200204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02860 1 642 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.622 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02860 bHLH-MYC_N 2.9e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02860 K13422 - gmx:100790854 842.032