LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02859	ATGGCGTCCCAAGGCTTCACCGACAAGACCACTGTTTTCAGGAAACTCAAGGCGAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCAACCTGGGCGTCCGTCACTTATGGGATCTTTCTCTGCATCGATTGCTCTGCCGTTCATCGCAGTCTCGGTGTTCACATCAGCTTCGTGAGATCTACAAACTTAGACTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACCGATGGTGGTAAAATAGAAGCTAAGTATACATCCAGAGCTGCTGATTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGCAAGCTTGCCTTCATCTCCTGTTGCTTCTCAGTCTCCCCAAGGGGCTAATGGACTTGCTGATGTCAAGACCAATGAAGTACTGAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAGTAGTATCAAATACTGTAAAAAAGCCTTTTGGGGCCAAGAAAACTGGGAAGAGTGGGGGGCTTGGTGCCAGGAAGCTCACTAGAAAGCCAAGTGAATCTCTCTATGAGCAGAAACCTGAAGAACCACCTGCTCTAGTTTCTTCCACAACAAACAACAATTTGTCTGCTGGGCCATCTCCGGCATCTCGGTTTGAGTATGTTGACAATGTCCAATCATCTGATTTCAATTCTGGAGGTTCACACGTAATCAGTCACGTGTCTGTGCCAAAGTCATCAAGCTTCTTTGCAGACTTCGGAATGGATAGTGGCTTTCCAAAGAAATCTGGGCCCAGCTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCCGAACAAGGCAGCAGATTCGGATGCTAAAGTTGCTTTGTCAAAGTTTTCAGGTTCAACTTCCATCTCCAGTGCTGATTTTTTTGGTGACTCAAGAGATAACCTCTCCGACGATCTTATTGCTAGCGACCTCCTCAACCGATTGTCTTTCCAGGCACACCAGGATATCTCTTCCCTTAGGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCATTGGCCTCCACCTTGATGACAGATCTTCAGGACCGAATGCTGATGGATGTTGGTGCTCCTCGCATAAGGGACTTGTTATCGGAAACAAGTAATGACGAGGAAGAAGAACCTGATGAGGGGAGTGATTCTGATTCAGGATTTGAGACTGTTGCCCTTCTTGACGTACATGCATTAGTACTAAAAGGTCACAAGATTTGGATATCTCTAAGTTCTTCAGAACAGGGAGCTGTGATTGAGGTTGCGGCACATCTTCGGCCATGGGCTTCTGACAAAGATAAAGCCACTTGTGGTGCTGACGACTGGAATATAGCAACACAAATACTTGAGGATTCTCACGACAAAGACCACTACACAACACCTCGTCATGAAACACCTCCCCCTATCCATTTTTCGTGA	1569	0.4512	MASQGFTDKTTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEEASLPSSPVASQSPQGANGLADVKTNEVLKENTLEKPEKPESTSSPRASHSVVSNTVKKPFGAKKTGKSGGLGARKLTRKPSESLYEQKPEEPPALVSSTTNNNLSAGPSPASRFEYVDNVQSSDFNSGGSHVISHVSVPKSSSFFADFGMDSGFPKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDPNKAADSDAKVALSKFSGSTSISSADFFGDSRDNLSDDLIASDLLNRLSFQAHQDISSLRNIAGETGKKLSSLASTLMTDLQDRMLMDVGAPRIRDLLSETSNDEEEEPDEGSDSDSGFETVALLDVHALVLKGHKIWISLSSSEQGAVIEVAAHLRPWASDKDKATCGADDWNIATQILEDSHDKDHYTTPRHETPPPIHFS*	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02859	522	SMART	arf_gap_3	10	126	IPR001164	GO:0005096
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	502	522	-	-
	Rops2g02859	522	FunFam	ADP-ribosylation factor GTPase-activating protein AGD10	1	137	-	-
	Rops2g02859	522	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	10	128	IPR001164	GO:0005096
	Rops2g02859	522	Gene3D	Arf GTPase activating protein	1	138	IPR038508	-
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	283	303	-	-
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	420	434	-	-
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	155	170	-	-
	Rops2g02859	522	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	125	IPR037278	-
	Rops2g02859	522	CDD	ArfGap_ArfGap2_3_like	8	123	-	-
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	131	238	-	-
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	221	238	-	-
	Rops2g02859	522	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED	6	405	-	-
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	418	437	-	-
	Rops2g02859	522	PRINTS	HIV Rev interacting protein signature	22	41	IPR001164	GO:0005096
	Rops2g02859	522	PRINTS	HIV Rev interacting protein signature	62	83	IPR001164	GO:0005096
	Rops2g02859	522	PRINTS	HIV Rev interacting protein signature	41	58	IPR001164	GO:0005096
	Rops2g02859	522	Pfam	Putative GTPase activating protein for Arf	11	100	IPR001164	GO:0005096
	Rops2g02859	522	MobiDBLite	consensus disorder prediction	131	147	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02859	Rops-Chr2	50096975	50114945	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02859	13	91	C2H2 Transcription Factor Family	AT4G21160	46.250	4.49e-19	86.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g02859	K12493		K11855	gmx:100789796	673.315