Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02858 ATGGCGTCCGAAGGCTTCACCGATAAGATCACTGTGTTCAGGAAACTCAAAGCGAAGTCTGAAAATAAGATTTGTTTTGATTGCAATGCTAAGAACCCAACGTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCATCGCAGTCTCGGCGTTCACATCAGCTTCGTAAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACCGACGGTGGTAAAATAGAGGCGAAGTATACATCCAGAGCTGCAGAGTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGTCTGAGGAGGCAGGCCTGCTTTCATCACCTGTTGCTTCTCCATCTGCCCAAGGGGCTAATGGACTTCCTGATGTCAGAACCAATGAAGTACCAAAAGAAAACTCTCTAGAGAAGCCAGAAAAGCCTGAGAGCACTTCATCACCTAAAGCTTCACATACAGTATTTTCAAGTACTGTGAGGAAGCCTATTGGGGCCAAGAAAACTGGGAAGAGTGGGGGACTCGGTGCCCGTAAGCTCACTAATAAGCCAAGTGAGTCTCTCTACGAGCAGAAGCCTGAAGAACCACCTGCTCCAGTTTCATCCTCAACAAACAACAATTTACCTTCTGGGCCATCTCCGACATCTCGGTTTGAATATGTAGAAAATGTCCAATCATCTGAGTTAAATTCTGGAGGTCCACATGTAATCAGTCACGTGACTCTACCAAAGTCATCAAGCTTCTTTGCAGATTTTGGAATGGATAGTGGCTTTCCAAAGAAATCTGGGCCAAGCTCCTCAAAAGTGCAAATTGACGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCCAAATCTATTTCTTCATCCCAATTTTTTGGAGAGCAAAACAAGGCGGCAGATGCGGATGCTCAAGTTACTTTGTCGAAGTTTTCAGGTTCAACTTCTATCTCCAGTGCCGATTTTTTTGGTGACTCAAGAGATAACTCCTCCATTGATCTTACTGCTAACGACCTCCTCAATCGACTATCTTTCCAGGCACAACAGGATATCTCTTCCCTTAGGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGTTCCTTGGCCTCCTCCTTGGTGACAGATCTTCAGGACCGAATCCTCTAA 1218 0.4483 MASEGFTDKITVFRKLKAKSENKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMSEEAGLLSSPVASPSAQGANGLPDVRTNEVPKENSLEKPEKPESTSSPKASHTVFSSTVRKPIGAKKTGKSGGLGARKLTNKPSESLYEQKPEEPPAPVSSSTNNNLPSGPSPTSRFEYVENVQSSELNSGGPHVISHVTLPKSSSFFADFGMDSGFPKKSGPSSSKVQIDESDEARKKFSNAKSISSSQFFGEQNKAADADAQVTLSKFSGSTSISSADFFGDSRDNSSIDLTANDLLNRLSFQAQQDISSLRNIAGETGKKLSSLASSLVTDLQDRIL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02858 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Rops2g02858 405 Gene3D Arf GTPase activating protein 2 137 IPR038508 -
Rops2g02858 405 MobiDBLite consensus disorder prediction 132 147 - -
Rops2g02858 405 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Rops2g02858 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Rops2g02858 405 MobiDBLite consensus disorder prediction 155 170 - -
Rops2g02858 405 MobiDBLite consensus disorder prediction 221 257 - -
Rops2g02858 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 405 - -
Rops2g02858 405 CDD ArfGap_ArfGap2_3_like 11 123 - -
Rops2g02858 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Rops2g02858 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 123 IPR037278 -
Rops2g02858 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Rops2g02858 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Rops2g02858 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Rops2g02858 405 MobiDBLite consensus disorder prediction 132 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02858 Rops-Chr2 50027083 50032338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02858 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 5.52e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02858 K12493 K11855 gmx:100785169 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02858 2 50027083 50032338 Rops2g02858 2 50027083 50032338 ECH