Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02847 ATGGCTTCTGTTGGCAATCCAATAACTTGGATTCCCTATGTGAACAACAAAGACTGTTCTCAAGGATTTTGTAGCTTGTACTGTCCACAATGGTGTTACATGGTCTATCCTCCTCCTCCACCCTTTGAATATCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTTATTGCAATCATTGGGATTTTTGCCACTGCTTTTCTACTTGTAAGTTACTATGCTATAATATCAAAGTACTGTGGCAACAGAGAATCTGCAAGGAGGGAAAACTCTGACCCAAATGATGAGTTGCAAGAAAATAACAATCCCTCACTCCATGAACCCTGGCAAGTTTCAACCACAGGAGGCCTAGATGAGGCTCTAATCAAGTCCATTGCAGTTTTTAAGTACAAGAAAGGAGATGGTTTTGTTGGAATCACTGATTGTTCTGTGTGTCTCAGTGAGTTTCAAGATAATGAAAGTGTTAGACTCTTGCCCAAATGCAACCATGCTTTCCATCTTCCTTGTATTGACACTTGGCTCAAATCTCATTCTAGCTGCCCTCTATGTCGTTCTAGCATATTCACCTTCAATGCTTCAACACTTCAGGTTCCAGCCCCAGTGATAGAACTCCCTTCAAGGAATGAGACTTCATCAGAAAATCAACATGCAGGTGAAAACTTAGCTGTTGGAAGTGGCAATGAATTAAGGGTGGTGGAAGAAGAAAGCATTCATCATTACAGAGTTGATCCAAAGCCTGCATTGCGTGCTTTTAGTGATTTGGGTAATTTGCAAGGAAGGCATAGAATAATTGAGATTAGAGATGAAGTGTATGAGTCCATGAGAAGGTCAATGTCTATGGATCATTCATTTCAAAATGGTCTTTCAGTTGCTGATGTTCTGCAAATGAATCAAGATGAAGATTCTCAAATAGAAGGGTGCTCTACCAATGCTAGTTCATCAAAGAGATCACGAGGAGAAAGTAGCAGCAAGCCCAGCTACAAAAGAAGGGTGTTGCATTGTGTATTGAGCCCAATTGCAATGAAGAGATCATTTTCCGGTGGAAGATTCTCACTTAGCAAAAGTGACAGAGGAAAACAGGGAATTATCCCTGTTTGA 1101 0.4078 MASVGNPITWIPYVNNKDCSQGFCSLYCPQWCYMVYPPPPPFEYPDDDSSPNFSPLVIAIIGIFATAFLLVSYYAIISKYCGNRESARRENSDPNDELQENNNPSLHEPWQVSTTGGLDEALIKSIAVFKYKKGDGFVGITDCSVCLSEFQDNESVRLLPKCNHAFHLPCIDTWLKSHSSCPLCRSSIFTFNASTLQVPAPVIELPSRNETSSENQHAGENLAVGSGNELRVVEEESIHHYRVDPKPALRAFSDLGNLQGRHRIIEIRDEVYESMRRSMSMDHSFQNGLSVADVLQMNQDEDSQIEGCSTNASSSKRSRGESSSKPSYKRRVLHCVLSPIAMKRSFSGGRFSLSKSDRGKQGIIPV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02847 366 CDD RING-H2_EL5-like 142 185 - -
Rops2g02847 366 Pfam Ring finger domain 142 185 IPR001841 -
Rops2g02847 366 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Rops2g02847 366 MobiDBLite consensus disorder prediction 300 328 - -
Rops2g02847 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Rops2g02847 366 MobiDBLite consensus disorder prediction 88 110 - -
Rops2g02847 366 FunFam RING-H2 finger protein ATL54 118 191 - -
Rops2g02847 366 SMART ring_2 143 184 IPR001841 -
Rops2g02847 366 MobiDBLite consensus disorder prediction 300 321 - -
Rops2g02847 366 SUPERFAMILY RING/U-box 142 191 - -
Rops2g02847 366 PANTHER RING-H2 FINGER PROTEIN ATL16 41 319 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02847 Rops-Chr2 49584409 49586363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02847 6 366 C3H Transcription Factor Family AT5G17600 41.114 5.19e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02847 - - gmx:100792267 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02847 2 49584409 49586363 Rops2g02847 2 49584409 49586363 ECH
Rops1g01247 1 28627812 28629520 Rops2g02847 2 49584409 49586363 PCT