Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02846 ATGGCTTTGGAAACTCTTTCATCCAATGAGTTTTCCAACTTCATTATCTATGACACTATCTCTGCAACCCCATTTATCAGCCATGACACTTCAGATGCTAGTTTCTTAGAAAATGCAGTGAACTATCAGGAACTTGATCCAACATTTGATAACTGTGAACTAAGGACCCGAAAACGCCAATCTGGTGAGCCAGAAACCATTGGCAGTAAGCAGAATCTTGTGGTGCAAGGGAGAAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACAAGGAAGAGGCTGAGACACAAAGAATCACCCACATTACAGTGGAAAGAAACCGTCGGAAACAGATGAATGAGCATCTTGCTATCCTCCGTTCACTCATGCCTGAGTCCTACGTTCAAAGGGGAGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGATCTGGAGCACCTCTTACAGTCACTTGAAGTTAGAAAGCTGCAACTTTTACAACAAGAAGTAGCACAAACCAATGAAGATACAACCATTTCCAAACTCATGCAACCACCTTTTGCACAATTTTTTGTGTATCCTCAGTACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACTTTAATCGAGTCCCATGCAAACCTTCGGATTCTCACCCGGAGAAGCCCCGGGCAACTAACAAAATTGGTTGCTGGTTTTCAAACACTTTACCTCACCATCCTACACCTCAATGTAACCACTATAGATCCTTTGGTGTTCTATTCTATCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTTGACGGCATTGCATCGGCAGTTCATCATTTGCTTGGAATAATTGAGGAAGAAGCTTCATTTTGCTGTTGA 900 0.4322 MALETLSSNEFSNFIIYDTISATPFISHDTSDASFLENAVNYQELDPTFDNCELRTRKRQSGEPETIGSKQNLVVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAILRSLMPESYVQRGDQASIVGGAIEFVKDLEHLLQSLEVRKLQLLQQEVAQTNEDTTISKLMQPPFAQFFVYPQYTWSQTPNKYTSKTKAAIADIEVTLIESHANLRILTRRSPGQLTKLVAGFQTLYLTILHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIASAVHHLLGIIEEEASFCC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02846 299 MobiDBLite consensus disorder prediction 73 94 - -
Rops2g02846 299 SMART finulus 102 153 IPR011598 GO:0046983
Rops2g02846 299 Pfam Helix-loop-helix DNA-binding domain 97 148 IPR011598 GO:0046983
Rops2g02846 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 147 IPR011598 GO:0046983
Rops2g02846 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 164 IPR036638 GO:0046983
Rops2g02846 299 Coils Coil 144 164 - -
Rops2g02846 299 PANTHER MAX DIMERIZATION, MAD 55 295 - -
Rops2g02846 299 Gene3D - 88 170 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02846 Rops-Chr2 49576647 49579491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02846 88 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.593 9.79e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02846 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02846 - - pvu:PHAVU_003G284500g 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02846 2 49576647 49579491 Rops2g02846 2 49576647 49579491 ECH