Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02844 ATGTCTCCGTCGATGAGACCTGACTATGACACACCATCGGCCACCACCGCATCATATGACACTCCTCCGGCGGCATTGAATGACACCCCGCCGGCATTGATAGCATTCACCCTCGCCGTCCTCATCCTCTGCTTTGTGGCTTTTAGCATTGTGTACTTGTGCAGGTATTGTTTTTCAAGCGTTATTCACACTTGGGCCTTTCAACGCACTGCCTCAGGTACCTTAATTCGTGGCTCACCTGATAGGTCACACCCTAGAGGCCTTGACCCTTCCCTTCTTGAGATGTTTCCCACCTTTCTCTATGCCTCCGTTAAGGACCTCCGCAAGGAGAAGACTTATAGCCTTGAATGCGCCATTTGCTTGCTCGAGTTTGAGGATGATAGCATGCTTCGTCTCTTGACCGTTTGCTGCCATGTTTTCCATCAAAAATGTATTGACCTTTGGCTTGATTCCCACGATACATGCCCCGTTTGTCGAAAGAACCTCAATTCACCACCCAAAGAAATGCCAAAATCTGAGTACTACAACAACAATTATAATGCACAAGAGGGTATGGTGTCCTCAACGAGTAACGACATAAGCATTGATATAAAAGAAGGGGAAGGTGATGGAGGTGGAGGTGGTGCTAGCGCTGGAGATGAACGTAAAAGTGATCACAAGAGTATAAGGAGGATTCAGCAACAGGACGAAGAAGAACAGAGAATTACAAGGTCACACTCAACGGGACATTCCATAGTTATGATTAGAGAAGGAGAAGGAAATGGAGAAAAAGATGATGATGATAAATACACATTGAGATTGCCTGAACATGTTATAAGAGCAAGGCACAACTGTTCCAGAAGTTGTGCAACTGATAAAGAGATGACAAGGCCTCCACCTCCACCTCCACCTTGTAGTAATTGTGGCTTTGTTCAACCGGTATCTGGCTCTTATTCCCACGGTCCTGCTTGA 951 0.4627 MSPSMRPDYDTPSATTASYDTPPAALNDTPPALIAFTLAVLILCFVAFSIVYLCRYCFSSVIHTWAFQRTASGTLIRGSPDRSHPRGLDPSLLEMFPTFLYASVKDLRKEKTYSLECAICLLEFEDDSMLRLLTVCCHVFHQKCIDLWLDSHDTCPVCRKNLNSPPKEMPKSEYYNNNYNAQEGMVSSTSNDISIDIKEGEGDGGGGGASAGDERKSDHKSIRRIQQQDEEEQRITRSHSTGHSIVMIREGEGNGEKDDDDKYTLRLPEHVIRARHNCSRSCATDKEMTRPPPPPPPCSNCGFVQPVSGSYSHGPA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02844 316 FunFam E3 ubiquitin-protein ligase ATL6 77 165 - -
Rops2g02844 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Rops2g02844 316 MobiDBLite consensus disorder prediction 212 238 - -
Rops2g02844 316 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Rops2g02844 316 MobiDBLite consensus disorder prediction 283 316 - -
Rops2g02844 316 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g02844 316 Pfam Ring finger domain 116 159 IPR001841 -
Rops2g02844 316 PANTHER RING FINGER DOMAIN-CONTAINING 16 162 - -
Rops2g02844 316 SMART ring_2 117 158 IPR001841 -
Rops2g02844 316 MobiDBLite consensus disorder prediction 195 262 - -
Rops2g02844 316 SUPERFAMILY RING/U-box 110 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02844 Rops-Chr2 49562738 49563688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02844 31 281 Rapid Response to Elicitors AT2G35000 34.483 1.37e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02844 - - gmx:100815505 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01249 1 28647825 28648690 Rops2g02844 2 49562738 49563688 PCT