Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02843 ATGGATTATGGACGAGACGGAAACGTTGTTCATATAATCACCGGCGGTGGTGGAAGCGGAGGAGAAAGCTGGTCCAGTGACCAAGCGGATTGGGCAACGGAAGACGAATACCGATTCTGGAACGGCAATGAGGCTGGGCCGGAAACGACGCCGTCAAACTCGAATTCCGAGCTAAGACAGTCTCAATCACGGTCAGGGAGTGAGCCGCCGAGTAAGAAGGCCAGGAATTCTTCGCAGGATGGTGGCGGCAATGGCTCGAACCGGTCCAAGGCTATCGGGAAGATGTTCTTCAAGACGAAGCTCTGCTGCAAGTTCCGGGCAGGGACTTGCCCTTACATAACCAACTGCAATTTTGCCCACAGCATCGAGGAGCTCCGCCGTCCGCCGCCGAATTGGCAGGAAATCGTGGCAGCCCACGAGGAGGAGAAGGCGGTTCTGATATCGGAGCCGAGGGAGGAGTTCCAGATTCCGACTTTGGGGTCATCTGGTTTTTCAGGGGACACGACACAGAGGTCTTATAAAGGCCGTCATTGCAAGAAGTTTTACACCGAGGAAGGGTGTCCCTATGGGGAAAGTTGTACGTTTCTTCATGATGAGCAATCCAAGAATCGTGAGAGTGTAGCTATAAGTTTAGGCCCTGGTGGTTATTCTGGTTCTGGTGCTGCCACTAGTGCTGCTGGTGCTGGGGCTGCTGCTGCTGCTGCTGCTGCTGCTGGGAGTGGACCTAATTCAAAGCCTTCTAATTGGAAAACCAGGATTTGCAATAAGTGGGAGATGACAGGGTATTGCCCCTTTGGCAATAAATGCCATTTTGCTCATGGTGCTACAGAATTGCACAGATATGGAGGTGGGCTAATGGAGGGAGAAAACAGAGACACTGCTTCTGCTGCTGCACCTGACACAAAACAGGGAGTACCTTCAAAAACTCATGCTGATAATGTGGTTGCATCAGCTACCCCTGTTGCTCATTCTGATGCTTATCATATTGGAGTCCCTTCTCAGAGGCCTTCCATTGTGATTCAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAA 1110 0.509 MDYGRDGNVVHIITGGGGSGGESWSSDQADWATEDEYRFWNGNEAGPETTPSNSNSELRQSQSRSGSEPPSKKARNSSQDGGGNGSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLISEPREEFQIPTLGSSGFSGDTTQRSYKGRHCKKFYTEEGCPYGESCTFLHDEQSKNRESVAISLGPGGYSGSGAATSAAGAGAAAAAAAAAGSGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDTASAAAPDTKQGVPSKTHADNVVASATPVAHSDAYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02843 369 SMART c3hfinal6 248 275 IPR000571 GO:0046872
Rops2g02843 369 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Rops2g02843 369 SMART c3hfinal6 172 199 IPR000571 GO:0046872
Rops2g02843 369 Gene3D - 91 127 - -
Rops2g02843 369 Gene3D - 242 280 - -
Rops2g02843 369 PANTHER CCCH ZINC FINGER/TIS11-RELATED 231 299 IPR045877 GO:0003729
Rops2g02843 369 ProSiteProfiles Zinc finger C3H1-type profile. 248 276 IPR000571 GO:0046872
Rops2g02843 369 MobiDBLite consensus disorder prediction 45 86 - -
Rops2g02843 369 FunFam Zinc finger CCCH domain-containing protein 92 128 - -
Rops2g02843 369 SUPERFAMILY CCCH zinc finger 171 200 IPR036855 GO:0046872
Rops2g02843 369 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Rops2g02843 369 SUPERFAMILY CCCH zinc finger 246 279 IPR036855 GO:0046872
Rops2g02843 369 FunFam Zinc finger, CCCH-type 166 204 - -
Rops2g02843 369 Gene3D - 165 215 - -
Rops2g02843 369 FunFam zinc finger CCCH domain-containing protein 15-like 242 281 - -
Rops2g02843 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Rops2g02843 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 249 274 IPR000571 GO:0046872
Rops2g02843 369 MobiDBLite consensus disorder prediction 1 89 - -
Rops2g02843 369 SUPERFAMILY CCCH zinc finger 94 127 IPR036855 GO:0046872
Rops2g02843 369 ProSiteProfiles Zinc finger C3H1-type profile. 96 123 IPR000571 GO:0046872
Rops2g02843 369 Pfam CCCH-type zinc finger 176 198 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02843 Rops-Chr2 49558972 49562129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02843 250 278 C3H Transcription Factor Family AT1G68200 62.069 3.23e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g02843 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02843 - - gmx:100788208 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02843 2 49558972 49562129 Rops2g02843 2 49558972 49562129 ECH