Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02839 ATGGCCGCGGAGGCACAAGAAAGGAAGAAGGAAGAAAAGGGTAGAAAGGAGCGAAAGGTCCCGTTCTTGAAGCTCTTCTCATTCGCTGACTTTTATGATTGTATCTTGATGGCAGTTGGATCTGTTGGGGCATGTGTTCATGGGGCCTCTGTGCCTGTTTTCTTTATCTTCTTTGGAAAGATCATTAATGTCATTGGTTTGGCTTATCTTTTTCCCAAAGAAGCATCTTACCATGTTGCCAAGTATTCGATGGATTTTGTGTATCTAGGTATAGTAATACTGTTTTCATCCTGGGCAGAGGTGGCTTGTTGGATGCATACTGGGGAGCGTCAAGCAGCAAAGATGAGGATGGCATATTTAAGGTCAATGTTGAATCAAGATATAAGTCTCTTTGATACCGAGGCATCAACGGGAGAGGTCATTTCTTCGATCACAAGTGACATCATCGTTGTTCAAGATGCATTATCTGAGAAGGTAGGGAACTTTATGCATTCCATAAGCCGATTTATGGCAGGCTTCATCATTGGTTTTCTCAAAGTGTGGCAAATCAGTTTAGTGACGCTTGCAATTGTACCCTTGATTGCCCTTGCTGGAGGTCTCTATGCATACGTGACTATTGGGCTTGTTACAAAAGTTCGCAAAGCATATGTAAGGGCTGGTGAAATCGCTGAAGAGGTGATAAGCAATGTCAGAACTGTACAAGCATTTGCAGGAGAAGAAAAAGCGGTCAGATCATATAAAGCGGCTCTGATGAACACTTATAGAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTTTGGGACTAGGCACTACTTACTGTGTCCTTTTCCTATCATGGGCACTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCACCAATGGTGGGGAGGCTTTCACTACCTTGCTCACTGTGGTGATGTCAGGCCTGTCACTTGGGCATGCAGCACCTAATATTTCTGCATTTATCCGAGCAAAGGCAGCAGCTTATCCCATCTTTGAGATGATTGAGAGGGGCTCAGTGAGCAAAATCAGCTCAAAAACTGGTCGAAAATTAAGCAATGTGGAGGGTCATATCCAATTTATGGATGTCTGTTTCAGTTACCCATCTCGTCCTGATGCGGTTATCTTCAACAATCTTTGTCTTGAGATTCCTTCAGGGAAAATTTTGGCCCTTGTGGGAGGAAGTGGTTCCGGAAAGAGCACAGTTATATCATTGATTGAGCGTTTCTATGAACCACTTTCTGGTCAACTACTATTAGATGGGAACAATATCAGGGAACTTGATATCAAATGGCTTAGACAACAAATTGGGCTAGTTAATCAAGAACCTGTACTTTTTGCTACAAGCATCAAGGAGAACATACTGTACGGAAAAGATGATGCCACTCTTGAAGAACTAAATCTTGCTTTGAAGCTTTCTGATGCCCAGTCTTTCATTAACAATCTTCCTGATCGATTAGATACTCAGGTTGGTGAGAGAGGCATACAATTATCTGGGGGACAGAAGCAAAGACTTGCAATATCTCGTGCTATTGTTAAGAATCCATCGATCCTTTTGTTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAAGAGGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTCATTGTGGCACACAGACTTTCTACCATTAGGAATGCAGATATGATTGTTGTTGTTCAAGAAGGGAGCATTGTGGAAACTGGGAGCCATGAGGAACTCATTTCTAACCCAAAAAGTGCATATGCATCTCTTGTTCAAATCCGAGAGGCAGCCTCTTTTCAAGGCCACCCTTCTACAGATCCTTGGTTGGGACGGTCATCAAGCAGAGAATTATCCTATGCAACAAGCATTGGTAGTAGTTTTCGTTCAGATAAAGAATCTATCGACCGTGCTTGTGCTGGTGAAGCAGAAAGTGTTGGAAGCTCAAGGCATGTTTCAGCAAGAAAACTATATTCCATGATTGGTCCTGATTGGTTTTATGGGGTTCTTGGAACCTTCTGTGCATTTATTGTTGGAGCCTTGATGCCACTTTTTGCTCTTGGAATATCTCATGCTCTTGTAGCATACTACATGGACTGGGATACAACATGTCATGAAGTTAAAAAAATTGCTTTCCTCTTCTGCGGGGCAGCAATTGTAGCAATCATTGCCTATGCCATTGAACATCTTTCTTTTGGAATCATGGGTGAACGACTTACACTCCGAGTGAGAGAAATAATGTTTTCAGCAATTTTGAAGAATGAAATTGGTTGGTTCGATGATATAAGCAACACAAGTTCGATGCTTTCATCATGTTTAGAGAATGATGCAACTTTATTGAAAACTATAGTTGTTGATCGTTCTACTATCCTCTTGGAGAACGCTAGTCATGTTGTTACTTCATTTATTATTGCCTTTATTTTGAACTGGAGGATAACTCTTGTTGTCTTAGCCACATATCCTTTGATCATTAGTGGTCATATCGGCGAGAAACTCTTCATGCAAGGCTTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGCCAACAAGTTAGCTGCGGAGGCTGTGAGTAATATACGCACCGTGGCTGCATTTTGCTCTGAAGAAAAGGTTCTTGACCTTTATGCAGATGAACTTGTTGAGCCTTCTAAGCATTCATTCAAACGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAATTCTTTATTTTCTCATCTTATGGACTTGCTTTGTGGTATGGTGGATCTGTCTTGATGGAAAAGGAACTTGCTAGCTTTAAATCAATTATGAAGTCATTCATTGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCACTAGCACCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTTATAGATAGAAAGACAAGAATAATACATGATGCTGGAGAAGAGTTGAAGACATTGGATGGAACAATTAAGCTAAAAAGAATCCATTTTAGCTACCCTTCAAGGCCAGACGTGGTTATTTTTAATGATTTCAATCTAACAGTGCGTTCAGGAAAAAGTATTGCCTTGGTGGGGCATAGTGGTTCTGGTAAAAGCTCAGTAATCTCCCTGATACTCAGATTTTATGATCCAACATCTGGGAAGGTGATGATTGATGGAAAAGACATCAGGAAAATTAATTTGAAATCCCTTAGGCAACATATTGGTCTTGTGCAACAAGAGCCAGCTCTTTTTGCAACATCAATTTATGAAAATATTCTTTATGGGAAGGAAGGAGCCTCTGAGTCAGAAGTAATTGAAGCAGCTAAACTTGCAAATGCTCATGATTTTATCAGTGCTCTTCCTGAGGGTTACTCCACCAAAGTAGGTGAGAGAGGAGTTCAACTATCAGGTGGTCAAAAACAAAGGGTAGCTATTGCCAGAGCTGTTCTGAAAAACCCTGAAATCTTGCTGCTAGATGAAGCCACCAGTGCACTTGATGTAGAATCAGAACGTGTGGTGCAGCAAGCTCTAGATAAATTGATGCAGAACAGAACAACAGTTATGGTGGCACACAGACTATCCACAATAAGAAATGCAGATCAAATATCAGTTTTACAGGATGGAAAGATAATTGAGCAAGGCACTCATTCAAGTCTTATAGAGAAAACGGATGGAGCATACTTCAAACTAGTCAGCCTTCAACAACAACAGCATGTGCAAGAGCATTATGGATGA 3726 0.4117 MAAEAQERKKEEKGRKERKVPFLKLFSFADFYDCILMAVGSVGACVHGASVPVFFIFFGKIINVIGLAYLFPKEASYHVAKYSMDFVYLGIVILFSSWAEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITSDIIVVQDALSEKVGNFMHSISRFMAGFIIGFLKVWQISLVTLAIVPLIALAGGLYAYVTIGLVTKVRKAYVRAGEIAEEVISNVRTVQAFAGEEKAVRSYKAALMNTYRNGRKAGLAKGLGLGTTYCVLFLSWALLAWFTSIVVHKNITNGGEAFTTLLTVVMSGLSLGHAAPNISAFIRAKAAAYPIFEMIERGSVSKISSKTGRKLSNVEGHIQFMDVCFSYPSRPDAVIFNNLCLEIPSGKILALVGGSGSGKSTVISLIERFYEPLSGQLLLDGNNIRELDIKWLRQQIGLVNQEPVLFATSIKENILYGKDDATLEELNLALKLSDAQSFINNLPDRLDTQVGERGIQLSGGQKQRLAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIVVVQEGSIVETGSHEELISNPKSAYASLVQIREAASFQGHPSTDPWLGRSSSRELSYATSIGSSFRSDKESIDRACAGEAESVGSSRHVSARKLYSMIGPDWFYGVLGTFCAFIVGALMPLFALGISHALVAYYMDWDTTCHEVKKIAFLFCGAAIVAIIAYAIEHLSFGIMGERLTLRVREIMFSAILKNEIGWFDDISNTSSMLSSCLENDATLLKTIVVDRSTILLENASHVVTSFIIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANKLAAEAVSNIRTVAAFCSEEKVLDLYADELVEPSKHSFKRGQIAGIFYGISQFFIFSSYGLALWYGGSVLMEKELASFKSIMKSFIVLIVTALAMGETLALAPDLLKGNQMVASVFEVIDRKTRIIHDAGEELKTLDGTIKLKRIHFSYPSRPDVVIFNDFNLTVRSGKSIALVGHSGSGKSSVISLILRFYDPTSGKVMIDGKDIRKINLKSLRQHIGLVQQEPALFATSIYENILYGKEGASESEVIEAAKLANAHDFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDKLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIEKTDGAYFKLVSLQQQQHVQEHYG* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02839 1241 PANTHER ABC TRANSPORTER B FAMILY 3 601 IPR039421 -
Rops2g02839 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02839 1241 SUPERFAMILY ABC transporter transmembrane region 659 974 IPR036640 GO:0005524|GO:0016020
Rops2g02839 1241 FunFam ABC transporter B family member 4 983 1237 - -
Rops2g02839 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02839 1241 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Rops2g02839 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 978 - -
Rops2g02839 1241 ProSitePatterns ABC transporters family signature. 1132 1146 IPR017871 GO:0005524|GO:0016887
Rops2g02839 1241 Gene3D - 983 1240 IPR027417 -
Rops2g02839 1241 Pfam ABC transporter 1012 1160 IPR003439 GO:0005524
Rops2g02839 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 334 - -
Rops2g02839 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1231 IPR027417 -
Rops2g02839 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 597 IPR027417 -
Rops2g02839 1241 FunFam ABC transporter B family member 1 351 600 - -
Rops2g02839 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 993 1229 IPR003439 GO:0005524
Rops2g02839 1241 Pfam ABC transporter transmembrane region 674 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02839 1241 Pfam ABC transporter transmembrane region 42 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02839 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Rops2g02839 1241 Pfam ABC transporter 380 528 IPR003439 GO:0005524
Rops2g02839 1241 SMART AAA_5 1020 1206 IPR003593 GO:0016887
Rops2g02839 1241 SMART AAA_5 388 574 IPR003593 GO:0016887
Rops2g02839 1241 Gene3D - 359 621 IPR027417 -
Rops2g02839 1241 SUPERFAMILY ABC transporter transmembrane region 25 331 IPR036640 GO:0005524|GO:0016020
Rops2g02839 1241 CDD ABC_MTABC3_MDL1_MDL2 993 1231 - -
Rops2g02839 1241 CDD ABC_MTABC3_MDL1_MDL2 361 597 - -
Rops2g02839 1241 Gene3D ABC transporter type 1, transmembrane domain 85 969 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02839 Rops-Chr2 49502729 49513558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02839 10 1237 Calmodulin-binding Proteins AT2G36910 50.000 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02839 K05658 - gmx:100809752 2016.12