Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02838 ATGGACTTGGAGGTACACGAGAGGAAGAAGGAAGAAGAGGGTAGAAAAGAGCCAAAGGTTCCTTTCTTGAAGCTCTTCTCATTCGCTGACTTTTATGATTGTGTCTTGATGGCTGTTGGATCTGTTGGGGCATGTGTTCATGGTGCCTCTGTTCCTGTTTTCTTTGTATTCTTTGGAAAGATCATCAATGTCATAGGCTTGTCTTACCAATTTCCCAAAGAAGCCTCTCACCAAGTTGGCAAGTATTCGTTGGATTTTGTGTATCTAAGTATAGTAATATTGTTTTCATCCTGGGCAGAGGTGGCTTGTTGGATGCATACTGGGGAGCGTCAAGCAGCAAAGATGAGGATGGCATATTTAAGGTCAATGTTGAATCAAGATATAAGTCTCTTTGATACCGAGGCATCAACGGGAGAGGTCATTTCTTCTCTCACAAGTGACATCATCGTTGTTCAAGATGCATTATCTGAGAAGGTAGGGAACTTTATGCACTACACAAGCCGATTTATAGCAGGCTTTATTATTGGTTTTGTGAGAGTGTGGCAGATCAGTTTGGTGACACTTGCAATAGTACCCTTGATTGCCCTTGCTGGAGGTCTTTATGCATACGCGACGATTGGGCTTGTTGCAAAAGTTAGGAAAGCATATGTAAAGGCTGGAGAAATCGCTGAAGAGGTGATAAGCAATATCAGAACCGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGATCATATAAAGCGGCTCTGATGAACACTTATAGAAATGGTCTAAAAGCAAGTTTAGCAAAGGGTCTTGGACTAGGCACTACTAACTGTGTCCTTTTTTTATCATGGGCTCTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCGCCAATGGTGGGGATGCTTTCACTACTATGTTCAATGTGGTGATCTCGGGCTTGTCACTTGGGCAGGCAGCACCAAATATTTCTACTTTTATTCGAGCAAAGGTAGCAGCTTATCCCATCTTTGAGATGATTGAGAGGGGCACAGTCAGCAAAATCAGCTCAAAAATTGGTAAAAAATTAAGCAACTTGGAGGGTCACATCCAATTTATGGATGTCTATTTTAGCTACCCATCTCGTCCTGATGCAATTATCTTCAACAATCTTTATCTTGAGATTCCTTCAGGGAAAATTTTGGCTCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACAATTATTTCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTCAAATACTATTAGATGGGAACAATATCAGGGAACTTGATCTCAAATGGCTTAGACAGCAAATTGGGCTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGCATCAGGGAGAACATACTATATGGAAAAGATGATGCCACTCTTGAGGAGCTAAATTTTTCTTTGAAGCTTTCCGATGCCCAGTCTTTCATTAACAATCTCCCTGATCGATTAGATACTAAGGTTGGTGAGAGAGGAATACAATTATCAGGGGGACAGAAGCAAAGGATTGCAATTTCTCGTGCTATAGTTAAGAATCCATCAATCCTTTTATTGGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAAGAGGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTCATAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATGTGATCGCTGTTGTTCAAGGAGGAAGCATTGTAGAAACTGGTAGCCATGAGGAGCTCAGTTCCAACACAAATAGTGTATATGCATCTCTTGTTCAAATCCAAGAGGCAGCCTCTTTTCAAGGCCACCCTTTTACGGATCCTTGCTTGGGACAGTCATCAAGCATAAAGCACACAAGAGAATTATCCCATACAACAAGCGTTGGTGGTAGCTTTCGTTCAGATAAAGAATCTACTGGCAGTGGTTATGCAGATGAAGCGAAAAGTATTGAAAAGTCAAGGCATGTCTCAGCAAGAAGACTGTATTACATGATTGGTCCTGACTGGTTTTATGGGGTTTCTGGAACCTTCTGTGCCTTTATTGCTGGATCCTTGATGCCACTTTTCGCTCTTGGAATCACCCACGCTCTTGTAACATATTATATGGAATGGCATACAACATGTCATGAAGTGAAAAAGATTGCTTTCCTCTTCTGTGGGGCAGCAATTGTAGCTATCATTGCCTATGCCATTGAACATCTTTCTTTTGGAATCATCGGGGAGCGACTTACCCTTCGTGTGAGGGAAATTATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAGCAACACAAGTTCTGTGCTTTCATCACGTTTAGAGACCGATGCAGCTTTATTAAAAACTATAGTTGTCGATCATTCTACAATTCTCCTACAGAATGTTGGTCATGTTGCTACTTCATTTGTTATTGCCTTCATTTTGAACTGGAGGATAACACTTGTTGTGTTAGCCACATATCCTTTGATCATTAGTGGTCACATCAGCGAGAAACTTTTCGTGCAAGGCTTCGGTGGCAACCTAAGCAAAGCATATCTAAAAGCTAACATGTTGGCTGCGGAGGCTGTGAGTAATATACGCACCGTGGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATGCTGATGAACTTGTTGAGCCTTCCAAGCATTCATTCAAACGGGGCCAAATTGCTGGAATATTCTATGGCATTTCTCAGTTCCTTATTTTCTCATGTTATGGCCTTGCCTTGTGGTATGGATCTGTCTTGATGCAAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGTCATTTATGGTTTTAATTGTAACTGCACTAGCTATGGGGGAGACTTTGGCACTAGCACCAGGTCTTTTGAAAGGAAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGACAGAAATAATGCATGATGTTGGCGAAGAGTTGAAGATAGTGGAAGGAACAGTTGAGCTAAAAAGAATCCATTTTAGCTACCCTTCAAGGTCTGACGTGGTTATTTTTAATGATTTCAATCTAACAGTGCCTTCAGGAAAGAGTATTGCCTTGGTGGGGCACAGTGGTTCCGGTAAAAGCTCAGTAATCTCTCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGATGATTGATGGAAAAGACATCAGGAAAATTAATTTGAAATCCCTTAGGCAACATATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATATATGAAAATATTCTTTATGGGAAAGAAGGAGCCTCTGATTCAGAAGTAATTGAAGCAGCCAAACTTGCCAATGCTCATAATTTTATCAGTGCTCTTCCCGAGGGCTACTCCACCAAAGTTGGTGAGAGAGGAGTTCAACTATCTGGTGGCCAGAAACAAAGGGTGGCTATTGCTAGGGCTATTTTGAAAAACCCTGAAATCTTGCTGCTAGACGAAGCCACCAGTGCATTGGATGTAGAGTCAGAGCGTGTGGTGCAGCAAGCTCTAGACAAATTGATGCAGAACAGAACAACAGTTATTGTGGCACACAGGCTATCCACAATAAGAAATGCAGATCAAATATCAGTTTTACAAGATGGAAAGATAATTGAGCAAGGCACTCATTCAAGTCTTGTAGAGAACACAGATGGTGCATACTTCAAATTAGTCAGCTCTCAACAACATGTACATGAATATCATGGATGA 3729 0.4111 MDLEVHERKKEEEGRKEPKVPFLKLFSFADFYDCVLMAVGSVGACVHGASVPVFFVFFGKIINVIGLSYQFPKEASHQVGKYSLDFVYLSIVILFSSWAEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSLTSDIIVVQDALSEKVGNFMHYTSRFIAGFIIGFVRVWQISLVTLAIVPLIALAGGLYAYATIGLVAKVRKAYVKAGEIAEEVISNIRTVQAFVGEERAVRSYKAALMNTYRNGLKASLAKGLGLGTTNCVLFLSWALLAWFTSIVVHKNIANGGDAFTTMFNVVISGLSLGQAAPNISTFIRAKVAAYPIFEMIERGTVSKISSKIGKKLSNLEGHIQFMDVYFSYPSRPDAIIFNNLYLEIPSGKILALVGGSGSGKSTIISLIERFYEPLSGQILLDGNNIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEELNFSLKLSDAQSFINNLPDRLDTKVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADVIAVVQGGSIVETGSHEELSSNTNSVYASLVQIQEAASFQGHPFTDPCLGQSSSIKHTRELSHTTSVGGSFRSDKESTGSGYADEAKSIEKSRHVSARRLYYMIGPDWFYGVSGTFCAFIAGSLMPLFALGITHALVTYYMEWHTTCHEVKKIAFLFCGAAIVAIIAYAIEHLSFGIIGERLTLRVREIMFSAILKNEIGWFDDTSNTSSVLSSRLETDAALLKTIVVDHSTILLQNVGHVATSFVIAFILNWRITLVVLATYPLIISGHISEKLFVQGFGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEEKVLDLYADELVEPSKHSFKRGQIAGIFYGISQFLIFSCYGLALWYGSVLMQKELASFKSIMKSFMVLIVTALAMGETLALAPGLLKGNQMVASVFEVMDRKTEIMHDVGEELKIVEGTVELKRIHFSYPSRSDVVIFNDFNLTVPSGKSIALVGHSGSGKSSVISLILRFYDPTSGKVMIDGKDIRKINLKSLRQHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISALPEGYSTKVGERGVQLSGGQKQRVAIARAILKNPEILLLDEATSALDVESERVVQQALDKLMQNRTTVIVAHRLSTIRNADQISVLQDGKIIEQGTHSSLVENTDGAYFKLVSSQQHVHEYHG* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02838 1242 FunFam ABC transporter B family member 1 351 600 - -
Rops2g02838 1242 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Rops2g02838 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1232 IPR003439 GO:0005524
Rops2g02838 1242 Gene3D ABC transporter type 1, transmembrane domain 24 964 IPR036640 GO:0005524|GO:0016020
Rops2g02838 1242 Pfam ABC transporter transmembrane region 679 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02838 1242 Pfam ABC transporter transmembrane region 42 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02838 1242 SUPERFAMILY ABC transporter transmembrane region 663 980 IPR036640 GO:0005524|GO:0016020
Rops2g02838 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 981 - -
Rops2g02838 1242 CDD ABC_MTABC3_MDL1_MDL2 996 1234 - -
Rops2g02838 1242 Gene3D - 987 1241 IPR027417 -
Rops2g02838 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Rops2g02838 1242 Gene3D - 351 600 IPR027417 -
Rops2g02838 1242 FunFam ABC transporter B family member 4 986 1239 - -
Rops2g02838 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 679 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02838 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 599 IPR027417 -
Rops2g02838 1242 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Rops2g02838 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 334 - -
Rops2g02838 1242 Pfam ABC transporter 1015 1163 IPR003439 GO:0005524
Rops2g02838 1242 SUPERFAMILY ABC transporter transmembrane region 25 331 IPR036640 GO:0005524|GO:0016020
Rops2g02838 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1234 IPR027417 -
Rops2g02838 1242 Pfam ABC transporter 380 528 IPR003439 GO:0005524
Rops2g02838 1242 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524|GO:0016887
Rops2g02838 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g02838 1242 PANTHER ABC TRANSPORTER B FAMILY 6 601 IPR039421 -
Rops2g02838 1242 SMART AAA_5 388 580 IPR003593 GO:0016887
Rops2g02838 1242 SMART AAA_5 1023 1215 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02838 Rops-Chr2 49465795 49474174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02838 658 1239 Calmodulin-binding Proteins AT2G36910 42.475 2.94e-127 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02838 K05658 - gmx:100819045 1993.01