Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02830 ATGCGCATGGAGAGAGAAAGAAAGAGAGAGAGACACCCAACGAAGAAACCACCTCACCGAATCGTGCACTCTTTCCTTCTCTTTTCTTCCTGCCCTAATTCCCCAAACCAAACAGATCCCGGGTCATCGCGTCGGAGAATTATGAGCTTCCAGGACATCGAAGCCGGCCGGCCTTTTGGTTCGAGGCGAGGTCTGATCAACGGGAAACAAGACCCCACGCAAGCGGTGGCTGCCGGAGTATTCCAGATCAACACGGCCGTGTCCACGTTTCAGAGGCTCGTCAACACCCTCGGAACCCCCAAAGATACCCCCGAGCTCCGTGAGAAACTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGAAATTGATCACCATGCCGAAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGCCTTGCAGCTGAGAGGGAAACAGCTTACACTGCTTCCGTTCCACAAGCAGTTCTTCCATCAAGCTATACAGCTAACGAAGTAGATGTTGGTTTTGATAAGACTCCAGAACAGCGTGCCCTTCTTGCGGAATCCAGGAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGATCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAACAAGGAGCCATGATTGACGATATTGGTTCCAACATTGAGAACTCCCATGCAGCAACTGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAATTCATCTTTGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTCCTCATCGTGATCATAGTTCTTGCTGCCTAG 963 0.4642 MRMERERKRERHPTKKPPHRIVHSFLLFSSCPNSPNQTDPGSSRRRIMSFQDIEAGRPFGSRRGLINGKQDPTQAVAAGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTASVPQAVLPSSYTANEVDVGFDKTPEQRALLAESRRQEVLFLDNEIAFNEAIIEERDQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02830 320 SMART tSNARE_6 222 289 IPR000727 -
Rops2g02830 320 ProSitePatterns Syntaxin / epimorphin family signature. 233 272 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops2g02830 320 Gene3D - 221 320 - -
Rops2g02830 320 Pfam Syntaxin-like protein 77 176 IPR006011 GO:0016020
Rops2g02830 320 FunFam Syntaxin-22 like 67 180 - -
Rops2g02830 320 PANTHER SYNTAXIN 73 312 IPR045242 -
Rops2g02830 320 Pfam SNARE domain 264 315 IPR000727 -
Rops2g02830 320 Gene3D - 67 182 - -
Rops2g02830 320 SMART SynN_4 62 174 IPR006011 GO:0016020
Rops2g02830 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Rops2g02830 320 CDD SynN 70 195 IPR006011 GO:0016020
Rops2g02830 320 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Rops2g02830 320 SUPERFAMILY t-snare proteins 70 282 IPR010989 GO:0016020|GO:0016192
Rops2g02830 320 CDD SNARE_Qa 247 288 - -
Rops2g02830 320 FunFam Syntaxin-22 like 220 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02830 Rops-Chr2 49302474 49307593 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02830 48 308 SNARE and Associated Proteins AT5G46860 77.395 2.32e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02830 - - gmx:547656 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01261 1 28872515 28875364 Rops2g02830 2 49302474 49307593 PCT