Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02803 ATGAGTGGTTTGGGGATTGTGGAGTGGGTTAGACCCCTTGTTGGGACCAAAGCTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATTGAGTGGATGGGTTGCTGTTGTAGAGGGAGTTGCAGTGGAAACATTGAGGAGGTGAAGCCCAAAGAGGAAATGGGTGAACAATATCACTTGACTCCTATTTGCAGGGATACTCTCTTTCAGCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCCCAGCTTCCTTTTGCAATGTCTCTGTATTCTGGTGTCCATGGAGAGGTTGCAATATCACAACAACCAAGATGGCTTACCCCGGAGGATTCAATTGGGACTCAAGTTTTGATCCCTATTGTTGGTGGTCTCATCGAGCTTTTCACTGCAAAGTTGATTCCAAAAGATTTAAATATCATAGAGTTCATAACGGCGCAATGTCGTGTCTCTATAAAGCAAGAAGCCATATCTGCACAGAGCAACACCAGTCTGAACTTCAATGAACATTACACTTTAACTCCTGGTGTCCATGTCCCTACAGCAAGCCGGTGCAGTTCCAATCCTAGTATTGAAGGACCCTCCAGTGAAACTATTCCTTCAATTGAACACCCACCATTTGATTCCAAGTTGGTTTGCTTGGTTCCACATGAATGCGTGAAGCAATCAGTTGACATATCTCCTATCCCAAAAACTAAGAAGCCCAAGTACAATGAAACTTCAGGGAAATGGCAGAGAGGTTTGAGTTCCCATTGTGGCAATGGGGAAGAAGATGAAGCAAAATTGGTCTGGGAGCCTCAAAAGGAAGGTTACCATGCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAAATAAAAAAAGGGCTTTTTACTCTACGGTCTCTTGTCCCAAAGATAACCAAGATGGATAGAGCAGCAATTCTTTCAGATGCAATTGACTATATAAAGGAATTGCAGAGTCAAGTGAAAGAACTTAAAGAAGAGATCAATGCTTTGGAAGAACAGGACTGTGAGAGGAACACACTACAGTTGAGGATGCCAACAGGCAAAGAAAAAGAAGGGACCAGAAGTCTCCCTCTCACAGAGCTTAATCAAAGTTCTTCTGATTGCACTAAGAAGACGCAGATGGAGGTGCAAGCAGAAGTGAATCACATTGGCAGGACAGATTTCTTGATTAAATTATACTGTGAGCAGAAACGAGGTGGGTTTTCAAGGTTGATGGAAGCTATACATTCATTTGGACTGCATGTGGCTAATGCCAATGTGGCCACATTTGATGGCAAAGTCGTGAACATTCTGACAGTTGAGGCAGCTGAACAGGATATTCACCCAATGAAACTGAAAGAGTATTTGATACGGCAAACAGGTTGA 1389 0.4291 MSGLGIVEWVRPLVGTKAWDYVVVWKYGDDPTRFIEWMGCCCRGSCSGNIEEVKPKEEMGEQYHLTPICRDTLFQHPVRTKTCEALAQLPFAMSLYSGVHGEVAISQQPRWLTPEDSIGTQVLIPIVGGLIELFTAKLIPKDLNIIEFITAQCRVSIKQEAISAQSNTSLNFNEHYTLTPGVHVPTASRCSSNPSIEGPSSETIPSIEHPPFDSKLVCLVPHECVKQSVDISPIPKTKKPKYNETSGKWQRGLSSHCGNGEEDEAKLVWEPQKEGYHAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILSDAIDYIKELQSQVKELKEEINALEEQDCERNTLQLRMPTGKEKEGTRSLPLTELNQSSSDCTKKTQMEVQAEVNHIGRTDFLIKLYCEQKRGGFSRLMEAIHSFGLHVANANVATFDGKVVNILTVEAAEQDIHPMKLKEYLIRQTG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02803 462 Coils Coil 314 351 - -
Rops2g02803 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Rops2g02803 462 CDD ACT_UUR-ACR-like 397 459 - -
Rops2g02803 462 SMART finulus 281 330 IPR011598 GO:0046983
Rops2g02803 462 Gene3D - 271 342 IPR036638 GO:0046983
Rops2g02803 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 341 IPR036638 GO:0046983
Rops2g02803 462 Pfam Helix-loop-helix DNA-binding domain 282 325 IPR011598 GO:0046983
Rops2g02803 462 MobiDBLite consensus disorder prediction 236 258 - -
Rops2g02803 462 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 458 - -
Rops2g02803 462 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 150 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02803 Rops-Chr2 48683273 48686409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02803 6 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 31.537 1.29e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02803 bHLH-MYC_N 6.7e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02803 - - gmx:100807261 656.366