Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02799 ATGCCAATGGCAACTACACCAGCACCCGCTGATGGGTCTGGCAAGAAGGTTAGAAAGCCTTACACCATTACCAAGTCAAGAGAGAGCTGGACTGAGGAAGAACACGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGGGATTGGAGGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTGATTCAGATTCGAAGCCATGCTCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACAGTAGCACATGTGCCTCCTCCTCGTCCTAAGCGCAAAGCTGCTCATCCATACCCACAAAAGGCATCCAAAAATGTTTTGGTGCCACTACCAGCATCCATTGCTTATGCATCTTCGACAAATACCCTTGCACCTGGGTATGCCACATGGGATGAAACTTCCATGCTGATGAATACCGGATCCAGTAAATCCATGACCTGTCAGGATGAACTCAACAATTTTCATGGAAATGAAGCTGATATTGGATAA 486 0.4362 MPMATTPAPADGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWRKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIAYASSTNTLAPGYATWDETSMLMNTGSSKSMTCQDELNNFHGNEADIG* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02799 161 CDD SANT 29 72 IPR001005 -
Rops2g02799 161 SMART sant 26 74 IPR001005 -
Rops2g02799 161 FunFam protein REVEILLE 6 isoform X1 29 77 - -
Rops2g02799 161 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g02799 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 76 IPR017930 -
Rops2g02799 161 PANTHER SWI/SNF COMPLEX-RELATED 13 148 - -
Rops2g02799 161 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Rops2g02799 161 Pfam Myb-like DNA-binding domain 27 72 IPR001005 -
Rops2g02799 161 ProSiteProfiles SANT domain profile. 25 78 IPR017884 -
Rops2g02799 161 Gene3D - 30 77 - -
Rops2g02799 161 NCBIfam myb-like DNA-binding domain, SHAQKYF class 25 74 IPR006447 GO:0003677
Rops2g02799 161 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Rops2g02799 161 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02799 Rops-Chr2 48655618 48656103 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops2g02799 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02799 - - vra:106754423 285.419