Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02761 ATGTATTGGGTTCACTCTCAAATCTGCCATGGCAGTGATGCTATAAACAGCCCTACTACTATTTCTCCATCTTCTTCTTGTTGTTGTTGTTCGTCTTCTTCTGCATCACTGTCTTATGGTTCTGACTACAAGAAACAATTAGCACCACCTCTAGCTTCTTCATCTGGCAATAGAATAAGTCCTGCAGTTGTTTTCATCATAGTCATTTTAGCTATTGTGTTCTTCATCTCTGGTCTCCTTCAGTTACTTGTTAGATTTCTCATAAAGCAGAGGTCCTCTTCATCAATTTCTCAATCCAATAGGTACCCTGACATATCTGAATCTGATCCTTACCAGAGACAGTTACAGCAGCTCTTCCATCTTCACGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTACCTGTCTTCCTTTATGAAGAGATAATAGGTTTAAAAGAGCCCTTTGATTGTGCAGTTTGTCTTTGCCAATTCTCAAAACAAGACATGCTGAGATTGCTGCCCATTTGTAATCATGCTTTTCACGTTGACTGCATAGACACATGGCTGCTGTCTAATTCAACTTGTCCCCTTTGTAGAGGGAATCTTTATGAACCAGGCTTTGCCTTTGAAAACCCAGTTTATGACTTTGAGGGTCTAAGGGAAGAAGATGGGGTTTCAGGAATTGTTACTGGTGAGGCTGCTTCTATTAACAAACATGCAGAGAATCACATAACGAATGGAAAAAGGGTGTTTTCTGTCAGGCTTGGAAAATTTAGAAGCTCAAATAATGGAGAGGGGTTGGAAAGAGGGGGAGGAGAGAGCAGTACAAGTAATGTGGATGTTAGGAGATGCTATTCAATGGGTTCTTTCCAGTATGTGGTAGCTGATTCAGATTTGCAAGTGGCTTTATGTCACAATAGAGGTGAAAGAGGAGGTATGGGTGGTAGCATGAGACATTTGCAAGGGAGATTAGCCCAATATGGGAATTCTTCCACTGACGGGGATGTTGAGGGGAAGAAAATCAACAATGCTAGGAAAGGAGAAAGCTTTTCTGTTTCCAAGATCTGGCTATGGTCTAGGAAGGACAAGGTGTCAAGTTCACAAGAACCCCATTTGGGTAATTCTAATGTCACTCCAACTTTGCCATGGAAGAATAGAGTTCAAGAAGTGGTCTTTAGTAGCAATTTCTTGCAATGA 1179 0.4139 MYWVHSQICHGSDAINSPTTISPSSSCCCCSSSSASLSYGSDYKKQLAPPLASSSGNRISPAVVFIIVILAIVFFISGLLQLLVRFLIKQRSSSSISQSNRYPDISESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYEEIIGLKEPFDCAVCLCQFSKQDMLRLLPICNHAFHVDCIDTWLLSNSTCPLCRGNLYEPGFAFENPVYDFEGLREEDGVSGIVTGEAASINKHAENHITNGKRVFSVRLGKFRSSNNGEGLERGGGESSTSNVDVRRCYSMGSFQYVVADSDLQVALCHNRGERGGMGGSMRHLQGRLAQYGNSSTDGDVEGKKINNARKGESFSVSKIWLWSRKDKVSSSQEPHLGNSNVTPTLPWKNRVQEVVFSSNFLQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02761 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 350 - -
Rops2g02761 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 198 IPR013083 -
Rops2g02761 392 SMART ring_2 151 192 IPR001841 -
Rops2g02761 392 FunFam RING-H2 finger protein ATL46 113 198 - -
Rops2g02761 392 SUPERFAMILY RING/U-box 130 199 - -
Rops2g02761 392 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Rops2g02761 392 Pfam Ring finger domain 150 193 IPR001841 -
Rops2g02761 392 CDD RING-H2_EL5-like 150 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02761 Rops-Chr2 46933045 46935230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02761 78 357 C3H Transcription Factor Family AT2G18650 39.103 2.40e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02761 - - gmx:100818135 543.888