Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02759 ATGCCACTTTCTACGGTGACAACTGAGAACTATGGTCATGATTCTCAACGTGTTCATCATGTTAAGTCAGACCCATACTTGAACCATGATCAGTATAGAACTCATGCAAAGGAGTTGGGTAGAGTTACACCCCCTGAGGAATATACATGTCCGATATCTTCAAGGTTGATGTATGATCCTGTTGTCATTGTTCCAGGAGAGACATATGAAAGAAAGTGGATACAGAAATGGTTCGATGAGGGTCATGATATATGCCCAAAGACTAAAAAGAAACTGGTCCATATGTCATTGACTCCTAATGTTGCCATAAAGGACTTCACTTCCTACAAAGTTCGAGTTCCGGTCACTGTGGCCATAATTCTTGACGAAAACTTATGA 378 0.4074 MPLSTVTTENYGHDSQRVHHVKSDPYLNHDQYRTHAKELGRVTPPEEYTCPISSRLMYDPVVIVPGETYERKWIQKWFDEGHDICPKTKKKLVHMSLTPNVAIKDFTSYKVRVPVTVAIILDENL* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02759 125 CDD RING-Ubox_PUB 45 97 IPR045210 -
Rops2g02759 125 SMART Ubox_2 47 110 IPR003613 GO:0004842|GO:0016567
Rops2g02759 125 Pfam U-box domain 45 105 IPR003613 GO:0004842|GO:0016567
Rops2g02759 125 ProSiteProfiles U-box domain profile. 43 123 IPR003613 GO:0004842|GO:0016567
Rops2g02759 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 112 IPR013083 -
Rops2g02759 125 PANTHER U BOX DOMAIN-CONTAINING 30 106 - -
Rops2g02759 125 SUPERFAMILY RING/U-box 38 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02759 Rops-Chr2 46894593 46894970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02759 44 108 U-box Gene Family AT1G27910 58.462 6.34e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02759 - - gmx:100797572 173.326