Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02740 ATGGAAGAAACTGGGAACAACAACAACACTGTTAACACTGTTTCTGCAGGGTCACCATCAAACCAACCCAACAAGCCTACTCCTCCACTCTCTCTCTCTCTCTCTCTCTATCCTGCAATGGCTAAAATAGTTCTTCTCTGCATTGCATCATTGGTCTCTCTTTTTGTTGCAGCCCAGGCTAGAATCCCTGGAGTTTATAGCGGTGGCCCATGGCAAACTGCTCATGCCACTTTCTATGGTGGCAGTGATGCCTCTGGAACAATGGGTGGTGCTTGTGGGTGTGGAAACTTATACAGCCAAGGCTATGGTGTGAACACTGCAGCACTGAGCACGGCACTTTTCAACAATGGCTTAAGTTGTGGTGCATGCTTTGAGATCAAGTGTGCACAAGATCCTCGTTGGTGCAACTCACCTCGACCTCACTTTGACCTTGCCATACCAATGTTCCTCAAGACCGCTCAATACCGTGCCGGAATCGTCCCCGTCACTTACCGCCGGGTACCATGCAGAAAGACAGGAGGCATCAGATTCACAATCAATGGCTTTCGTTACTTCAACCTGGTTGTGATCACCAACGTCGCAGGTGCAGGGGATCTCGTGCGCATGAGTGTGAAGGGAAGCAACATTGCATGGATGAGCATGAGTCGTAACTGGGGGAGAAATTGGCAATCTAATGCAGTTTTGGGGGGCCAGACCTTCTCTTTTAGAGTCACCGGCAGTGACCGACGAACCTCAACGTCATTGAATGTGGCACCAATCGCATCAACTGTGACAACAACACCGGAAATGATGGTGAAAGACAAGGGTGTGTTGATTTGTTTGGTAAAAGGAGAAGAGGAGAGAGCATGGATAATTGGTGTTGTTTGCTTATTGTGTGGAGTGCTTTCTGAAAATAACCGGTGCAGCAAACTCCCAGATGTGTGTGGTAGAGGGTTGTTTATTCTTGCATGCAACACTAACGTGATTGACTTGTTCTTTAGAGATACAAGTGGTTCACATGAGATAAGGAATGCGATAGGTGATGTTGTCGTGATTGCTCGACTTCCTGATGCTACATTAGCAATGCCTGAGATCTTATCAAGTACCAGCAGCAAGGGAATAAGCTCTCAGTTCAAGAGTTTTGCATACTTATATAACGAGGACCAATTTGTATACTCATTATCAAATGATGTCAAAGTTGTGAGAGCTCTTCCAAAAGTCAGGTGCAAGTTCTAA 1215 0.4642 MEETGNNNNTVNTVSAGSPSNQPNKPTPPLSLSLSLYPAMAKIVLLCIASLVSLFVAAQARIPGVYSGGPWQTAHATFYGGSDASGTMGGACGCGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCAQDPRWCNSPRPHFDLAIPMFLKTAQYRAGIVPVTYRRVPCRKTGGIRFTINGFRYFNLVVITNVAGAGDLVRMSVKGSNIAWMSMSRNWGRNWQSNAVLGGQTFSFRVTGSDRRTSTSLNVAPIASTVTTTPEMMVKDKGVLICLVKGEEERAWIIGVVCLLCGVLSENNRCSKLPDVCGRGLFILACNTNVIDLFFRDTSGSHEIRNAIGDVVVIARLPDATLAMPEILSSTSSKGISSQFKSFAYLYNEDQFVYSLSNDVKVVRALPKVRCKF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02740 404 SMART dpbb_1 106 164 IPR007112 -
Rops2g02740 404 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Rops2g02740 404 PANTHER EXPANSIN-A15 133 256 IPR002963 GO:0009664
Rops2g02740 404 SUPERFAMILY PHL pollen allergen 171 253 IPR036749 -
Rops2g02740 404 CDD DPBB_EXPA_N 70 169 - -
Rops2g02740 404 PRINTS Expansin signature 128 139 IPR002963 GO:0009664
Rops2g02740 404 PRINTS Expansin signature 101 115 IPR002963 GO:0009664
Rops2g02740 404 SUPERFAMILY Barwin-like endoglucanases 70 192 IPR036908 -
Rops2g02740 404 Gene3D - 57 170 IPR036908 -
Rops2g02740 404 Gene3D - 174 262 IPR036749 -
Rops2g02740 404 PRINTS Expansin/Lol pI family signature 70 85 IPR007118 GO:0005576
Rops2g02740 404 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Rops2g02740 404 PRINTS Expansin/Lol pI family signature 110 128 IPR007118 GO:0005576
Rops2g02740 404 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 89 174 IPR007112 -
Rops2g02740 404 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 252 IPR007117 -
Rops2g02740 404 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02740 Rops-Chr2 46382552 46384367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02740 43 252 Expansin Gene Family AT2G39700 69.874 1.67e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02740 - - gmx:547955 377.481