Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02703 ATGATTTTTACCCGTTCTGCTTTGTTGCTCCATCTCCAAAACCCACCAATTCGCTACCAAGTGTTCTCTCACTTCAACAATGCTCACGCCTCTCTGTTCAATTTCAAAGCTCGCTTCTCTTCTCTACCCCCTTCTCTCCGAACGCGAACCCGAGCCTTTGCAACTGCTGTTGCATCAACATCAAAAGATTCCAAAGGCAGAGAAACTTTCTTTGCAGAAGAGAACGTTCAGTGGAGTTCACTCGGTCTCTCTGATACCCTCTCTCGAGCTCTCTCTAACATTGGCCTCCATAGACCCTCTCTCGTTCAGGCTTCTTCTATACCATCTGTGCTTTCAGGGAAGGATGTAGTTATTGCAGCAGAGACTGGTAGTGGTAAGACATATAGTTACTTGGTTCCTCTAATTGATAAGCTAAGAGACACCCAGGAACATTCTATTGATGTTGTATCTGATCAAGAAGTGTCTCCGCCCCGGAAGGTTCTGCTCGTACTTTGTCCGAATGTGCAACTATGTGAGCAGGTAGTTAGGATGGCTAACAGACTCTGCAGAGACAATGGTGAAACCATAGTTAGTGTCGCAGCAGTTTGTGGCAGACAGGGATGGCCAATTCGGGAACCCGATATCATTGTGACGACACCTGCTGCTTTGCTGAATTACGTTGACATGGATAGATCCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTGCTCTGTGGGAGCTTCCAGAATAAAGTGATCCGCCTGATAAACTTGCTCCGCTTTGATGAAAAACTCTTGTCTCGATCAAAAGAATCAGTAGCAGAGTTGCCAATGAAATCAGATTCTTCCTTGTCATCACATGATGCTTTGGAAGATGAAGAGGAGCTTCCAATTGAAGCTGCATCAGAAGAAGAGGAGGAGGAGGATGATAATGAGGGTACTGTTGATATTAATAATGAAGCTGAATCTGTTAAACGAAGAGAATGGAGGAGGAGAGTGAGGAAGAATTATGAGCGTAGTAAACAGTATATTTTTGTTGCTGCTACACTTCCACTGAATGGAAAGAAAACAGCTGGAGCAATATTGAAGCATATGTTTCCTGATGCTGAGTGGGTTAATGGAAACTATCTTCATCGTCACAATCCAAGATTGGAGCAAAGATGGATAGAAGTTATAGTTGATACACAGGTGGATGAACTCATAAAGGCTGTAAATCACTGTTTCAGATCTGAAGATTTGGATAATGCTGGTGGCATCCACAGAACAATGGTGTTTGCCAACACTGTTGAAGCTGTTGAAGCTGTGGCAAAGATATTGCTCCAGTGTGGGATTGAATGCCTACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACCTTAGTTGATTTCCGCGAGAAAGGTGGTATTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCGACTTCTGCTGTGGACTTTTTGCATAGGGTTGGTCGTACAGCCAGAGCAGGTCAAATCGGACTTGTTACTAGCATGTACACTGAATCCAACAGAGAGCTTGTTGATGCAGTTCGTCAAGCAGGGGCACGTGGTCAACCTGTGGAGACCGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAAAAGCGAGCGAGTGCTAATGTAGTCAGAGATTCAGCAACTATTAAAGAGAGTGTTGCAGCATGA 1743 0.4406 MIFTRSALLLHLQNPPIRYQVFSHFNNAHASLFNFKARFSSLPPSLRTRTRAFATAVASTSKDSKGRETFFAEENVQWSSLGLSDTLSRALSNIGLHRPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLVPLIDKLRDTQEHSIDVVSDQEVSPPRKVLLVLCPNVQLCEQVVRMANRLCRDNGETIVSVAAVCGRQGWPIREPDIIVTTPAALLNYVDMDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRSKESVAELPMKSDSSLSSHDALEDEEELPIEAASEEEEEEDDNEGTVDINNEAESVKRREWRRRVRKNYERSKQYIFVAATLPLNGKKTAGAILKHMFPDAEWVNGNYLHRHNPRLEQRWIEVIVDTQVDELIKAVNHCFRSEDLDNAGGIHRTMVFANTVEAVEAVAKILLQCGIECLRYHKNCTLEERAQTLVDFREKGGILVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRQAGARGQPVETAFSRKRSFRNKLKKRASANVVRDSATIKESVAA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02703 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 370 IPR014001 -
Rops2g02703 580 CDD SF2_C_DEAD 386 524 - -
Rops2g02703 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 551 - -
Rops2g02703 580 MobiDBLite consensus disorder prediction 294 318 - -
Rops2g02703 580 SMART ultradead3 95 389 IPR014001 -
Rops2g02703 580 MobiDBLite consensus disorder prediction 279 321 - -
Rops2g02703 580 Pfam DEAD/DEAH box helicase 102 266 IPR011545 GO:0003676|GO:0005524
Rops2g02703 580 Pfam Helicase conserved C-terminal domain 422 515 IPR001650 -
Rops2g02703 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 76 104 IPR014014 GO:0003724
Rops2g02703 580 Gene3D - 387 580 IPR027417 -
Rops2g02703 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 527 IPR027417 -
Rops2g02703 580 Gene3D - 47 368 IPR027417 -
Rops2g02703 580 SMART helicmild6 435 515 IPR001650 -
Rops2g02703 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 563 IPR001650 -
Rops2g02703 580 CDD DEADc 87 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02703 Rops-Chr2 45416452 45426356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02703 414 537 Eukaryotic Initiation Factors Gene Family AT5G11170 34.127 5.45e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02703 - - gmx:100789323 879.011