Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02690 ATGGTGTCTTCTAGAGGAGAACCCTCGGGACAACCCCAGATGATGAGTAGTGGTCAGAAACTAACCACACATGATGCCTTAGCATATCTCAAGGCCGTAAAGGATATGTTTCAGGATAAGAGGGAAAAGTATGATGACTTCTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGACTTGATACACAAGGTGTCATTGCAAGAGTAAAGGAGCTGTTTAAAGGGCATAAAGATCTAATTTTGGGATTTAACACCTTCCTGCCAAAGGGATATGAAATCACACTTCCATTGGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTGCAGAAGCTATAAATTTTGTTGGCAAGATTAAGACTCGATTTCAAGGCAATGATCGTGTTTATAAGTCATTTCTAGACATATTGAATATGTATAGAAAGGAAACCAAGTCTATCACCGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGATCTGCTTGAGGAGTTTACACATTTTCTTCCTGATACTTCAGGAACAACCTCTACTCATTATGCTGCTGCTCGAAACTCTCTACTTCGTGATAGGAGCTCTGCAATGCCAGCAATGAGGCAAATGCATTCTGACAAGAGAGAAAGGACCATAGCTTCACATGGTGATCGTGACCTCGGTGTTGACCATCCTGATCCAGAACTTGACAGAGGTTTGATGAGGGCTGATAAGGAGCAGAGAAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAAAGAGACAGGAGAGAACAGGAAAGGGACGACAGGGATTATGATCATGATGGTAGTCGGGAGCATTTATCCCACAAGCGAAAATCTGGTCGTAGGGCTGAAGATTCAGGTGCTGAGCCATTGCAGGATGCAGATGAAAATTTTGGTATGCGCCCCATCTCCTCTGCTTGTGAGGATAAAAGTTCTTTGAAAAATATGTGCAGTCAAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCCTTGGTGGGTGATTTACTCGGAAAATATGCTGATCTTATGGAGGGATTTAATGAATTTTTGGCACAATGTGAGAAGAATGAAGGATTCCTTGCTGGCGTCATGAATAAAAAGTCCTTGTGGAATGAAGGACATGGACTGAAACCAATAAAGGTAGAGGACAGGGATCGAGATCGTGATAGGGATGATGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGAGACAAATCTACTGCAATTGCCAACAAGGATGTTCCAGTTCCGAAGATGTCTCTATATGCTGGCAAGGATAAGTATGTCTCGAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAACGATGCACTCCGAGTTACCGTCTTCTACCTAAAAATTACCTAATACCGCAAGCTAGCCAGAGAACTGAACTTGGTGCAGAAGTATTGAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTATAAATGTGACAACTAAGCGAGTTGAGGAGCTCTTAGAAAAGATTAATTCTAATATAATTAAAGGAGACAGTCCAATTCGTGTTGAGGAGCACTTAACAGCTCTAAATTTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTGATGGATGTATTAAGGAAGAATGCATCTATAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGGTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGCTTCTACTTTAAGCAGCAGGATACGAAAAGCTTGAGCACTAAAGCCTTACTGACAGAGATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCTAACTTGGAATTTGAGTATCCTGATCTGGAGATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAGTCTGTACAACTGAACAATTGGATAAAGTTATGAAGATATGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCACGGTCCCGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGCCAAAAGTGGAAGTGTTGCTGAGGGCGTTGGCAGTCCTGATGTTGGTGTTACCATTATGAATCCTAAGAATTTAAACACTAATAGGAATGGGGATGAGAGTGTTTTGTTAGAACAATCAAATTCTTGCAAAGAATGGCAAACTAATGGGAATGGTGGGATTAAAGAGGATAATTGTCTTGAATCAGACCGTTCTACACATAAGAATGAAACTTCGGGAAGTAGTACCCAGCAGGGTAAAATTCATCCAAGTGCAGGCATGCCTGATGAAGTATCACAAGTCAATAAGCAAGATCATTCCATCGAACGGTTGGTGAATACTAATGTCTCACTGTCCTCAGGGGTGGAGCAAAGTAATGGAAGAACAAATGTGGACAATGCATCAGGATTTATGACAACTCCATCTAGACCTGGCAACGTTTCTGGTGAGGGAGGACTTGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACCAGTTACATCCACAAATGGGGCCATCACTGAAGACACCAAAGTTCACAGATATCATGAAGAATCAGTTAGAAACTTCAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGAGATGCTGGTTTGAAGGCAGTGCATAAAGGAAGAGATGGTAGTATGACTCAACAACACCAAAATAGACATGGGGAAGAAGTTTGTGGTGAAGCCGGAGGCGAAAATGATGCTGATGATGAAGGTGAAGAAAGTCCTCATAGATCATCAGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAACATGAGGAGGATGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGAACCTCATTGCCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCTCTGGCAAAACATGTTCCGCTACTGTTGCACGAGCAAGAAAGGAATGTTCATGTTTTTTATGGAAATGATTCCTTTTATGTCCTGTTTAGGCTTCATCAGATATTGTATGAGAGGATACAATCAGCTAAGATTAACTCATCATCAGCGGAAAGGAAATGGAGAGCTTCAAATGAAACAGGCTCTGGTGATCAATATGGCAGGTTCATGAATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTATTCACATTAGACAAACTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGATGAGATGGATAACAAGCTTCTTCAACTATATACATATGAACAATCAAGAAAACCTGGAAGATTTGTTGATATTGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTGTTGAATGTTCACTTGCTCCTACCCGATTGTCTATTCAACTGATGGACTATGGACATGATAAGCCTGAAGTGACAGTTGTGTCAATGGATCCTAATTTTTCAGCCTATCTGCACAATGATTTCCTATCTGTTGTCCCTGACAAAAAGGAGAAGTCGGGAATTTTCTTGAAAAGGAATAAACGCAAATATGATGAATTTTCAAGCCAGGCCATGGATGGACTACAAGTTATCAATGGTCTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGTTTCGTACAGGCAAAGTCTTCAATCATTTGTTCAAGCAGAGCACAGCGGTTTTGCAAATTGTTTTCCATTAAATGATGGTATCCAATTTGAGCCGGTTAAATGTATTTTTGGTCATGCATTGGTGGCAGAGGCGCTAGATGGAAATGACATCAGATCCAAGAAGGGGAGCAAAGGATGTTTTTCTTAA 4239 0.4091 MVSSRGEPSGQPQMMSSGQKLTTHDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRLDTQGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAINFVGKIKTRFQGNDRVYKSFLDILNMYRKETKSITEVYQEVAALFQDHADLLEEFTHFLPDTSGTTSTHYAAARNSLLRDRSSAMPAMRQMHSDKRERTIASHGDRDLGVDHPDPELDRGLMRADKEQRRRGEKEKDRREERDRREQERDDRDYDHDGSREHLSHKRKSGRRAEDSGAEPLQDADENFGMRPISSACEDKSSLKNMCSQVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYADLMEGFNEFLAQCEKNEGFLAGVMNKKSLWNEGHGLKPIKVEDRDRDRDRDDGMKERDRECRERDKSTAIANKDVPVPKMSLYAGKDKYVSKPINELDLSNCERCTPSYRLLPKNYLIPQASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESINVTTKRVEELLEKINSNIIKGDSPIRVEEHLTALNFRCIERLYGDHGLDVMDVLRKNASIALPVILTRLKQKQDEWARCRADFNKVWGEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLTEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYPDLEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPHGPEDTEDVVKAKNNSAKSGSVAEGVGSPDVGVTIMNPKNLNTNRNGDESVLLEQSNSCKEWQTNGNGGIKEDNCLESDRSTHKNETSGSSTQQGKIHPSAGMPDEVSQVNKQDHSIERLVNTNVSLSSGVEQSNGRTNVDNASGFMTTPSRPGNVSGEGGLDLPSSEGADSTRPVTSTNGAITEDTKVHRYHEESVRNFKSEREEGELSPNGDFEEDNFAVYGDAGLKAVHKGRDGSMTQQHQNRHGEEVCGEAGGENDADDEGEESPHRSSEDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEAEGMADANDVEGDGTSLPYSERFLLTVKPLAKHVPLLLHEQERNVHVFYGNDSFYVLFRLHQILYERIQSAKINSSSAERKWRASNETGSGDQYGRFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYTYEQSRKPGRFVDIVYHENARVLLHDENIYRVECSLAPTRLSIQLMDYGHDKPEVTVVSMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYDEFSSQAMDGLQVINGLECKIACNSSKVSYRQSLQSFVQAEHSGFANCFPLNDGIQFEPVKCIFGHALVAEALDGNDIRSKKGSKGCFS* 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02690 1412 ProSiteProfiles PAH domain profile. 312 385 IPR003822 GO:0006355
Rops2g02690 1412 Pfam Sin3 family co-repressor 475 566 IPR013194 -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 1 20 - -
Rops2g02690 1412 ProSiteProfiles PAH domain profile. 105 175 IPR003822 GO:0006355
Rops2g02690 1412 MobiDBLite consensus disorder prediction 413 438 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 203 292 - -
Rops2g02690 1412 Gene3D Paired amphipathic helix 25 87 IPR036600 GO:0006355
Rops2g02690 1412 MobiDBLite consensus disorder prediction 991 1006 - -
Rops2g02690 1412 FunFam Paired amphipathic helix SIN3-like protein 104 175 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 986 1084 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 815 864 - -
Rops2g02690 1412 ProSiteProfiles PAH domain profile. 19 89 IPR003822 GO:0006355
Rops2g02690 1412 Coils Coil 542 562 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 191 306 - -
Rops2g02690 1412 SUPERFAMILY PAH2 domain 17 88 IPR036600 GO:0006355
Rops2g02690 1412 Coils Coil 237 257 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 938 961 - -
Rops2g02690 1412 SUPERFAMILY PAH2 domain 320 385 IPR036600 GO:0006355
Rops2g02690 1412 PANTHER SIN3B-RELATED 19 1261 IPR039774 GO:0003714
Rops2g02690 1412 MobiDBLite consensus disorder prediction 1043 1071 - -
Rops2g02690 1412 FunFam Paired amphipathic helix protein SIN3 314 387 - -
Rops2g02690 1412 Gene3D Paired amphipathic helix 103 176 IPR036600 GO:0006355
Rops2g02690 1412 FunFam Paired amphipathic helix protein Sin3 25 87 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 876 907 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 876 971 - -
Rops2g02690 1412 Gene3D Paired amphipathic helix 315 387 IPR036600 GO:0006355
Rops2g02690 1412 MobiDBLite consensus disorder prediction 766 799 - -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 1016 1030 - -
Rops2g02690 1412 Pfam C-terminal domain of Sin3a protein 1118 1356 IPR031693 -
Rops2g02690 1412 MobiDBLite consensus disorder prediction 922 937 - -
Rops2g02690 1412 Pfam Paired amphipathic helix repeat 338 382 IPR003822 GO:0006355
Rops2g02690 1412 Pfam Paired amphipathic helix repeat 129 172 IPR003822 GO:0006355
Rops2g02690 1412 Pfam Paired amphipathic helix repeat 42 86 IPR003822 GO:0006355
Rops2g02690 1412 SUPERFAMILY PAH2 domain 101 174 IPR036600 GO:0006355
Rops2g02690 1412 SMART hdac_interact2seq4b 473 573 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02690 Rops-Chr2 45124628 45136198 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02690 21 101 WRKY Transcription Factor Family AT4G12020 65.432 4.75e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops2g02690 Sin3a_C 6.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02690 K11644 - gmx:100781798 2180.22