Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02685 ATGACTAGTGAAGGTGGTAGGAAACTAACTGAAAATGATGCCCTAGCATATCTCAAGGTAGTAGAGGATGTCTTTCAAGATGAGAAGGAAAAATATCATAACTTTTTGGAACTCATGAGGGATTTCAAAGATCAGAGAATTGACACTGAAGGTGTTGTAGTAAAAGTGAAGGAGATGTTTAAAGGACACAATGAGCTACTTTTGGGATTTAACCTCTTCTTGCCAAGAGAATATGAAATCAGGGTTCCATTAGAGGATGAACAACCTCCTAAGAAGATGCTTGGTGGAAATGAAGAAGCTATAGGTTTTGTGGACAAGGGTAAGAGAAAGGTATTAGAGGATGAACAACCTCCTCCTAAGAGGATGCTTGGTGGATATGAAGATGCCACAAATTTTGTGAACAAGGTTAAGACTCGGTTTCAAAGCAATGGTCATGTTTACAAGTCCTTTCTAGACATCATGAATATGTTGGGAGAGGGAAAAAAGTCTATGAGGGAGACTTACCAAGAGATTGCTGCACTTTTTGAGGGCCATGCAGATCTTCTTCAGGAGTTAGCTATTTTTCTTCCCAGTAATTCAGGAGCTGCCTCTACTTGA 597 0.397 MTSEGGRKLTENDALAYLKVVEDVFQDEKEKYHNFLELMRDFKDQRIDTEGVVVKVKEMFKGHNELLLGFNLFLPREYEIRVPLEDEQPPKKMLGGNEEAIGFVDKGKRKVLEDEQPPPKRMLGGYEDATNFVNKVKTRFQSNGHVYKSFLDIMNMLGEGKKSMRETYQEIAALFEGHADLLQELAIFLPSNSGAAST* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02685 198 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Rops2g02685 198 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Rops2g02685 198 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Rops2g02685 198 Pfam Paired amphipathic helix repeat 145 189 IPR003822 GO:0006355
Rops2g02685 198 FunFam Paired amphipathic helix SIN3-like protein 124 192 - -
Rops2g02685 198 SUPERFAMILY PAH2 domain 7 76 IPR036600 GO:0006355
Rops2g02685 198 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Rops2g02685 198 SUPERFAMILY PAH2 domain 126 191 IPR036600 GO:0006355
Rops2g02685 198 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Rops2g02685 198 PANTHER SIN3B-RELATED 9 194 IPR039774 GO:0003714
Rops2g02685 198 Gene3D Paired amphipathic helix 128 190 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02685 Rops-Chr2 45025710 45027062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02685 1 89 WRKY Transcription Factor Family AT4G12020 48.913 2.57e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops2g02685 PAH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02685 K11644 - tpra:123896139 215.698