Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02646 ATGGCGGGTGGGAAGCTTTATGAGGGTACAATCATGACAGTTCAACTCCGAAATGAAAGGCCTCCATGCTCCTCTGAGTTTGTTGAGTCTCTCTGGGTTCATAGTCACAGCTTTGAACCTTCTTTTCAAGGTTCAAAATCCCTGGTTAATGTTGTGAAAGTTAATGGGAACGGAGTCACAGATAGGCCCTTCTTCGAAGCGCTTGAGAAAGAAGAGAATGGTGATGATGAGGATTACGAAGTGTGTTTCCATCAACCAGGTAAGAAAAGGAGGCTCAAAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTTGAGGTAGAAAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAATCGGAGAGCAAGGTCCAAGACCAAACAGCTAGAAAGAGACTACTGCACATTGAAAGCTAGCCATGACATACTCAAAGGTGACTATGACAATCTTCTCCAAGAGAATGAAAAGTTAAAACAAGAGGTTAATTCTCTCAAGAACAGGCTGATTCCCAGAGAGAAAGATGAACAGAATTTAGAAGATAAGAACTTTGACAATGTCAATTCACAGCATAAAGATCATACGGATCTAATCTTAAATGCAGCTCCTGAAAATGGGTCCAAAGTGCCACTTCCTGTTATGGTCATATGCAAACAGGAAGATGCCAATTCAGCTAAAAGTGATGTGGTTGATTCTGAGAGCCCACATTACACTGATAGAAACCAATCCTCATTTGTGGAGCCTGCAGATTCCTCTCATGCTTTGGAACCATACCAGTCAGATTTCTTGCAAGATGAAGAAGATATCTTAAGCCAAAACCTCTTGACTGTGCCATTCCTACCAAAGGTTGAAGGTGGCTGTTATGATGAACCATCTGAAAATTCTTGCAGTTTTCGGTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTACTGA 984 0.4207 MAGGKLYEGTIMTVQLRNERPPCSSEFVESLWVHSHSFEPSFQGSKSLVNVVKVNGNGVTDRPFFEALEKEENGDDEDYEVCFHQPGKKRRLKSEQVQFLESNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSKTKQLERDYCTLKASHDILKGDYDNLLQENEKLKQEVNSLKNRLIPREKDEQNLEDKNFDNVNSQHKDHTDLILNAAPENGSKVPLPVMVICKQEDANSAKSDVVDSESPHYTDRNQSSFVEPADSSHALEPYQSDFLQDEEDILSQNLLTVPFLPKVEGGCYDEPSENSCSFRFPVEDQTFCFWSY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02646 327 FunFam homeobox-leucine zipper protein ATHB-6-like 91 137 - -
Rops2g02646 327 Gene3D - 82 149 - -
Rops2g02646 327 MobiDBLite consensus disorder prediction 239 266 - -
Rops2g02646 327 Coils Coil 156 183 - -
Rops2g02646 327 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Rops2g02646 327 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Rops2g02646 327 SMART HOX_1 85 147 IPR001356 GO:0003677
Rops2g02646 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 233 IPR045224 GO:0003700
Rops2g02646 327 Pfam Homeobox associated leucine zipper 143 184 IPR003106 GO:0006355|GO:0043565
Rops2g02646 327 CDD homeodomain 86 144 IPR001356 GO:0003677
Rops2g02646 327 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Rops2g02646 327 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Rops2g02646 327 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Rops2g02646 327 SUPERFAMILY Homeodomain-like 78 145 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02646 Rops-Chr2 43995735 43998068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02646 44 184 Homeobox Transcription Factor Family AT3G01470 53.901 4.64e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g02646 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02646 - K09338 gmx:100804328 454.907