Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02634 ATGGCTAAACTTGACATTATAATTCTTTTGCTTTGTTTGGCTGTTCTCACTCCTACTTTGCATGCCAATATCAAAGAGGGAGATGAGTATTGGCAGGACCATGTCATCGAGTTTGATTCATATTGGCAGGAAAGGGCAAAAATTGCTAAACAGGACAATCAAAAAGCTTATTCTGATGATCCATATGCTGTCTCCAGCAACGTGACCGCCAGTATTAGCGAGATCTTAGTTGGGAAAAATACACGAAGGAACTTGAGGGGAAGAAGAGGAGCACGTCAATGCATGGCGACGAACCCAATCGACAGGTGCTGGAGGTGTGACCGCAATTGGGCAAACAACCGTCAGAAGCTAGCAGATTGTGTTCAGGGATTTGGCAGAAACACTGTTGGTGGAAAAGGTGGACCAATTTATGTGGTAACAGATCCCTCAGATAATGACATGTTGGATCCCAAACCAGGTACACTTCGCCATGCAGTTACACGAAATGGGCCTTTATGGATCATCTTTGCTCGTAGCATGGTGATTACTCTCAAACAGGAACTCATAATGGCTAGTAACAAGACCATTGATGGTAGAGGAGCTGATGTTTACATTGCTAATGGTGCTGGTATTACCATCCAGTATGTGAAGAATATCATCATCCATGGGATCAAAATTTTCAACAGTCAGGTCCGTGATGGTGGAATGATTAGAGACTCTGAGAGCCATTATGGTTTGAGGACTAGGAGTGATGGTGATGGGATTTCCATCTTTGGTGCTAGCAATGTTTGGATTGACCATGTTTCCATGAAAAATTGCTCAGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACAGTCATTTCACTGATCACAATGAGGTGATGCTGTTTGGTGCTAGTGACAGCTACGCTGATGATAAGATAATGCAAATCACCGTGATATTCAACCACTTTGGCAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATGGGGTTTTATCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGAACCCCACCATTATTAGTGAGGGTAACCGGTTTATAGGCCCTGACAATGCTTTTGCCAAAGAGGTGACAAAGAGGGAATACTCACCAGAGAATGAGTGGTCAAATTGGCAATGGAGATCAATCAATGATGACTATATGAATGGGGCATTTTTTGTCCAATCTGGACCTGAGCTCAAAAACAGACCATTCTCAAGGAAGGACATGATCACAGCTAAGCCAGGGAGTTATGTTGGAAGACTCACACGTTATGCTGGCACCCTTGCATGTCGTGTTGGCAAGCCATGTTAA 1344 0.4368 MAKLDIIILLLCLAVLTPTLHANIKEGDEYWQDHVIEFDSYWQERAKIAKQDNQKAYSDDPYAVSSNVTASISEILVGKNTRRNLRGRRGARQCMATNPIDRCWRCDRNWANNRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDNDMLDPKPGTLRHAVTRNGPLWIIFARSMVITLKQELIMASNKTIDGRGADVYIANGAGITIQYVKNIIIHGIKIFNSQVRDGGMIRDSESHYGLRTRSDGDGISIFGASNVWIDHVSMKNCSDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDSYADDKIMQITVIFNHFGKRLVQRMPRCRWGFIHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIGPDNAFAKEVTKREYSPENEWSNWQWRSINDDYMNGAFFVQSGPELKNRPFSRKDMITAKPGSYVGRLTRYAGTLACRVGKPC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02634 447 Pfam Pectate lyase 179 363 IPR002022 -
Rops2g02634 447 Gene3D - 97 440 IPR012334 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Rops2g02634 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Rops2g02634 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Rops2g02634 447 SMART amb_all 172 369 IPR002022 -
Rops2g02634 447 PANTHER PECTATE LYASE 18-RELATED 50 445 IPR045032 GO:0030570
Rops2g02634 447 Pfam Pectate lyase, N terminus 34 85 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02634 Rops-Chr2 43660085 43663691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02634 13 447 Polysaccharide Lyase AT1G14420 58.980 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02634 K01728 - gmx:100798579 751.51