LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02633	ATGGAGCTTACCCCTGTGAAGTCTGAACTAAGCCCAAGAAATCATGGTTTGCTCATGATGGATGGTGATGTTATTGCCACTAATAAGTGTGTCAAAAGGAGGCGAAGAGATTCATCTATAGCAGTGTTAGGGTGCAATGAACAACAAGGTGAACATTCTGAAGAACAGCAGCAACTGGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGACATAGGTGGACTGGAAGGTTTGAAGCCCATCTATGGGATAAAGGGACCTGGAATCCAACTCAGAAGAAGAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAGTACCTTGCTTCACTAAGAAGGAGGAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGCAACAAGTACCTCTATCTAGGGACTTACAGTACACAAGAAGAGGCAGCTCGTGCATATGACATTGCAGCAATTGAATATAGAGGCATAAATGCAATAACAAACTTTGATTTGAGCACCTACATAAGATGGCTAAGACCAGGAGCAAACTCTATTGCTTCTCAAGAGCAAAAGCCAAGCAAAGACCCTCAACCTTTTGCAACCTCTAACTCTATCCAAACTAGAGGAAACACAGAGTTATCCAACTCCAACATCCATCCATTCCCCGCAGGAGAATTGGACAGCAACAAGAAGCAAGACTTTTCCAAGTACATAACCCCTTTAAGTCCTTGCAATAAACCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTTAATTCTTCCAATGAAGAGGCTGAAGAAGTTGAATTGAAATACCCACAAGATGGAAGTGAGGGAATTGGAGGGATTTTTGATAATGACAACACCAATAACTCTTACTTGTGCCCTTCCAAAATCAACAGATTACCTAACTTGGAGTCATCAGAAGAGAGTTCTTTGCCTATGTATCATGGAACTGTGCCATCCTTATGGAATGGTGCTTTCAACATGTCTAACTGA	1197	0.4194	MELTPVKSELSPRNHGLLMMDGDVIATNKCVKRRRRDSSIAVLGCNEQQGEHSEEQQQLGGQSTATTVKRSSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAITNFDLSTYIRWLRPGANSIASQEQKPSKDPQPFATSNSIQTRGNTELSNSNIHPFPAGELDSNKKQDFSKYITPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSNEEAEEVELKYPQDGSEGIGGIFDNDNTNNSYLCPSKINRLPNLESSEESSLPMYHGTVPSLWNGAFNMSN*	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02633	398	MobiDBLite	consensus disorder prediction	47	72	-	-
	Rops2g02633	398	Gene3D	AP2/ERF domain	165	226	IPR036955	GO:0003700\|GO:0006355
	Rops2g02633	398	Gene3D	AP2/ERF domain	67	132	IPR036955	GO:0003700\|GO:0006355
	Rops2g02633	398	ProSiteProfiles	AP2/ERF domain profile.	67	130	IPR001471	GO:0003700\|GO:0006355
	Rops2g02633	398	MobiDBLite	consensus disorder prediction	47	71	-	-
	Rops2g02633	398	SUPERFAMILY	DNA-binding domain	165	226	IPR016177	GO:0003677
	Rops2g02633	398	CDD	AP2	165	226	IPR001471	GO:0003700\|GO:0006355
	Rops2g02633	398	MobiDBLite	consensus disorder prediction	240	283	-	-
	Rops2g02633	398	FunFam	AP2-like ethylene-responsive transcription factor	165	226	-	-
	Rops2g02633	398	SMART	rav1_2	73	136	IPR001471	GO:0003700\|GO:0006355
	Rops2g02633	398	SMART	rav1_2	166	230	IPR001471	GO:0003700\|GO:0006355
	Rops2g02633	398	MobiDBLite	consensus disorder prediction	240	276	-	-
	Rops2g02633	398	Pfam	AP2 domain	165	216	IPR001471	GO:0003700\|GO:0006355
	Rops2g02633	398	ProSiteProfiles	AP2/ERF domain profile.	166	224	IPR001471	GO:0003700\|GO:0006355
	Rops2g02633	398	SUPERFAMILY	DNA-binding domain	72	132	IPR016177	GO:0003677
	Rops2g02633	398	Coils	Coil	317	337	-	-
	Rops2g02633	398	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	54	293	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02633	Rops-Chr2	43648989	43651384	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02633	66	228	AP2-EREBP Transcription Factor Family	AT5G57390	66.467	5.91e-75	238

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Rops2g02633		AP2	8.3e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g02633	-		-	gmx:100799621	661.373