Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02621 ATGAATTCCTACCAAGTTCACATGTTCCACACTCCATTTCGCGTTCTGATATCTCCATGGGCAAAGCCACCAAACATGCATCTCTTGCTTTGGCTTCGTGCCAATACGAACACTACCATTTATCACTCACCAGCTATCCTTTGTTCATCACTCAGTGACGACTCCTTTTCCTTCCCAAAACCAACCCAGTTGGGTTATAGTCCTCCAGAGGAACTGTTCGGGCTGGAGGTGGAACTCAAGCCAAGTAAAGTTGACTCTCATACACCAGAACCGAGGTCCTGGTTTGGTCCGAATGGACAGTACATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGAAGGGGTTATACTCCTTGTACAGAGTGTGGAATAGAAAGATCAAGGTTAGACTGTCCAAAATGTAATGGAAAGGGTATAATGACTTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAAGAATCAATTGATGAACAGCCATGGGAGAGAGCCCGTACTATATCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAACTTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCACCTCCTGAAGTTGGATTAAAGATTAGTCGTTCACTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAACCGAATGAAGATAATCCACCAGGATCCCATGCTTCGAGCACAGCGAGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCATGCTTCCAAAACTATGAAAGCTTACTTCAGTGATCCAATAAACCGTCAGAAAAGGAGCATAGCCATGAAGGGAGTGAAATTCTACTGTCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAAGAATAGTTTGATTGATAGGCGATTCACATGCAGGGTGTGTGGGAAAAAAGGCCACAACAGAAGAACATGTAGTAAGTTAAGGGTAAGCAATAGCAATGGGAGAGTAATAAAACATCATAGGTGTACAATATGTCACCAATATGGCCATAACAGCAGGACATGCCCTGAAGTTGGTTCTAATAAAAGAAGGGACACGGCCTCTCCAAGACCCTACAAGTGTGGGTTGTGCCAGAAAGAGGGACACAATAGTAGGACATGTCCAAGTAGAAGAGTTGTTACTGAGCATCCTCAAGAGTAA 1191 0.4425 MNSYQVHMFHTPFRVLISPWAKPPNMHLLLWLRANTNTTIYHSPAILCSSLSDDSFSFPKPTQLGYSPPEELFGLEVELKPSKVDSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRLDCPKCNGKGIMTCHQCSGDRVIWEESIDEQPWERARTISPLKVKEDDEVDNLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPMLRAQRVAAIKKAKGTVAARKHASKTMKAYFSDPINRQKRSIAMKGVKFYCQNCGREGHRRHYCPELKNSLIDRRFTCRVCGKKGHNRRTCSKLRVSNSNGRVIKHHRCTICHQYGHNSRTCPEVGSNKRRDTASPRPYKCGLCQKEGHNSRTCPSRRVVTEHPQE* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02621 396 Gene3D - 276 325 - -
Rops2g02621 396 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Rops2g02621 396 MobiDBLite consensus disorder prediction 377 396 - -
Rops2g02621 396 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 104 152 IPR036410 -
Rops2g02621 396 SUPERFAMILY Retrovirus zinc finger-like domains 331 388 IPR036875 GO:0003676|GO:0008270
Rops2g02621 396 Gene3D - 332 395 - -
Rops2g02621 396 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 83 328 - -
Rops2g02621 396 ProSiteProfiles Zinc finger CCHC-type profile. 308 323 IPR001878 GO:0003676|GO:0008270
Rops2g02621 396 SMART c2hcfinal6 370 386 IPR001878 GO:0003676|GO:0008270
Rops2g02621 396 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Rops2g02621 396 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Rops2g02621 396 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Rops2g02621 396 SUPERFAMILY Retrovirus zinc finger-like domains 278 324 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02621 13 389 C2H2 Transcription Factor Family AT5G20220 60.051 6.72e-163 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02621 - - gmx:100800156 667.151