Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02619 ATGTTGCATTTGCAGTTACAGCTTCACTCACCACCACCACCACTCTTATCATCTTCTTCCTCCTCTTCCCTTAAGCTTTGCCCAAACCACTCTTTCTCTCCAAAGTCTTTTCCTTTCAACCCTCCTAAACCCTTCACCCAACAAATCAGATGCCGCCAATCAGATCTATTTGACAACAAAACCTTCTCCTCCACACCACAACCTGTTAGCCCCACTGCTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCTCTCACTGTGACTCCTAGACCCCCGGAATTTATGCCACTTGATTCAGGGGCATACAAGATATCTAAGGATGGTTATCTGCTGCTTCAGTTTGCGCCTGCCGTTGGTTCGCGCCAATATGATTGGACTAGAAAGCAGGTGTTCTCGTTATCAGTGGATGAAATGGGAAGTGTGATGAGCCTTGGTGCAAGGGAGTCCCTTGAATTTTTTCATGATCCTTTGAAGGGAAAAAGTGATGAAGGTAAAGTAAGAAAAGTTTTGAAGTTGGAGCCTCTTCCAGATGGTTCTGGTCACTTCTTTAACCTCAGTGTTCAAAACAAGATTGTGAACGTGGATGAAAACATCTATATCCCAGTTACAAAAGCAGAGTTAGCAGTTTTGAGCTCAATGTTCAATTTTATTTTGCCATACCTTCTAGGTTGGCATACCTTTGCAAACTCCATAAACCCGGATTATTCAAGTGGAGTGAATAATGCCAACCCAAGATTCGGAGGAGACTATGAATGGAACAGATAG 795 0.4377 MLHLQLQLHSPPPPLLSSSSSSSLKLCPNHSFSPKSFPFNPPKPFTQQIRCRQSDLFDNKTFSSTPQPVSPTASVGALPPRVYVGHSIYKGKAALTVTPRPPEFMPLDSGAYKISKDGYLLLQFAPAVGSRQYDWTRKQVFSLSVDEMGSVMSLGARESLEFFHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNVDENIYIPVTKAELAVLSSMFNFILPYLLGWHTFANSINPDYSSGVNNANPRFGGDYEWNR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02619 264 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Rops2g02619 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 264 IPR009044 GO:0003677|GO:0006355
Rops2g02619 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 58 264 IPR013742 GO:0003697|GO:0006355|GO:0006952
Rops2g02619 264 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 73 248 - -
Rops2g02619 264 Gene3D Transcriptional Coactivator Pc4; Chain A 72 246 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02619 Rops-Chr2 43353280 43356439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02619 20 264 Whirly Transcription Factor Family AT1G14410 64.400 1.14e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Rops2g02619 Whirly 4.8e-60 CL0609