Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02607 ATGCAAGATATGAAGAAGCAGAAGCAGCAGAGTAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTTAGAGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACATACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCGGAGGAAGACATACTCTTATGTGAGGCTCAAAAAATATTTGGGAACAGATGGACGGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTCTGCAGAAAGAGGGAAAAACATGCAGCTTTAGCAAAAGAGAACAGCATTTCATACATTAATTCGAATAACAAGAGGCTTATTTCCCAACATGGTTATAATACAGATGCAACATCAGAGTCTGCAGTAACAGTTAAGAAGATGAGGAGGGGCCATATCCCTGATGATACAAAAAAGATCAACTTTGGAGACAGGTCACATTTGAGAAATGGAACTCCAATAAGTCAGAAGCTTAGAGCACCATTTGCTGTATTAGCTCAAAACTCCCATAATGCAAACAACTTGCCAGATCAGCATCGTGATTGCCATGCCAAGTTTAACAGTTCTGCTTCTGCAGTCCAACATAACAAGATCCAAGGAACATTCCTCAAAAAGGATGACCCAAAGATAAGTGCATTGATGCAACAGGCAGAGTTACTCAGTTCTCTAGCTCTAAAAGTTGATACAGAGAACATGGACCAAAGTCTTGAAAATGTATGGAAGGTTCTTCAACAGTTTCTGAACCGAACCAAAGAATCAGATATCCCTAGGCATAAGATTCCAGGTTTACAACTTGTAGATCTTAAAGATATGGTTGAGGACATGAAGAGTAGTAATGAGGGAGGCCTGCCCTGTTGGAGGCAAATGGAACTATATGAAGACTCTCCGGGAAGTTCTGAATACAGTACAGGATCAACTTTCCTGCCTCAGTTAGCTGGTGATAATTTGGAACAAGCATTGCATCAGGATATTGGAACTGAAACGAAGGCTACACAATTTGGAGATGAAAAAGAAGTAAGTGGAGGTGAGAAGGGGATTCTTTCTGCTGCAAATGTGGATCAAGATGTGTTGTTACCACACTGTGAGGAACAGAAAAACAATGATGGTGTTGTTTCTGCCTCATCAAGATTGGAGTTTAGTTCCCCTCTTCAAGTAACCCCTATGTTCAGATCCTTGGCTGCAGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTAAGGAAAACACTGGGAATGGAGTCTCCATCCTTCAATCCAAGTGCCAACCCCTCACAACCACCACCCTGCAAAAGAGCCCTACTACATAGTCTATGA 1434 0.4135 MQDMKKQKQQSNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDILLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKREKHAALAKENSISYINSNNKRLISQHGYNTDATSESAVTVKKMRRGHIPDDTKKINFGDRSHLRNGTPISQKLRAPFAVLAQNSHNANNLPDQHRDCHAKFNSSASAVQHNKIQGTFLKKDDPKISALMQQAELLSSLALKVDTENMDQSLENVWKVLQQFLNRTKESDIPRHKIPGLQLVDLKDMVEDMKSSNEGGLPCWRQMELYEDSPGSSEYSTGSTFLPQLAGDNLEQALHQDIGTETKATQFGDEKEVSGGEKGILSAANVDQDVLLPHCEEQKNNDGVVSASSRLEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLRKTLGMESPSFNPSANPSQPPPCKRALLHSL* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02607 477 Gene3D - 12 73 - -
Rops2g02607 477 MobiDBLite consensus disorder prediction 451 477 - -
Rops2g02607 477 MobiDBLite consensus disorder prediction 1 20 - -
Rops2g02607 477 Coils Coil 1 21 - -
Rops2g02607 477 Gene3D - 75 148 - -
Rops2g02607 477 CDD SANT 77 118 IPR001005 -
Rops2g02607 477 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Rops2g02607 477 SMART sant 73 121 IPR001005 -
Rops2g02607 477 SMART sant 21 70 IPR001005 -
Rops2g02607 477 Pfam Myb-like DNA-binding domain 25 85 - -
Rops2g02607 477 CDD SANT 24 68 IPR001005 -
Rops2g02607 477 ProSiteProfiles Myb-like domain profile. 25 68 IPR001005 -
Rops2g02607 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 68 IPR017930 -
Rops2g02607 477 PANTHER MYB PROTEIN-RELATED 24 193 - -
Rops2g02607 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Rops2g02607 477 FunFam Transcription factor MYB124 17 73 - -
Rops2g02607 477 SUPERFAMILY Homeodomain-like 21 115 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02607 Rops-Chr2 43194416 43201139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02607 63 477 MYB Transcription Factor Family AT1G14350 52.632 8.20e-137 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g02607 Myb_DNA-bind_6 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02607 K09422 - gmx:100807667 721.85