Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g02597 | ATGGCTGATTCTCAGAAAACTGGTGTTGGCGACAACAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGCTCATATCTTCTGAAGTACGGGCGAAGAGGGAAGCCAAAGTTCTGCCCTTTTAGGCTTTCCAATGATGAGTCTCTACTCGTATGGTACTCTGGTAAGGAAGAGAAACAGCTTAAGCTCAGTACTGTTTCAAGGATCATTCCCGGGCAGCGAACAGCAACATTTCAGCGATATCCTCGACCTGAGAAGGAATATCAGTCATTTTCTCTTATATACAACGATAGGTCCTTGGATTTGATATGCAAGGATAAAGATGAAGCTGAAATCTGGTTTGTCGGTCTTAAGGCATTAGTTACTCGAGGTAACTATCGCAAGTGGAGATTCGAATCAAGATCTGAAAGTCTGTGTTCTGACAGTCCAAAGTCTAGCACACAAAGATCTACTCCATCAAATACACCATTTGACCCTGGAGATAATAATGGAGTTTCTTTTGAAAATTCTTCGCAAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCATACACTGCAGCTAGCAAGAGTCCCAGTCAAGCTGAATCAATTGCAAATTCCTCTTTATCCTCCAGCTCCGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGTCAGGGTTCTTATCATGAAGATTTTGATGCCTTAGGCGACATTTTTATTTGGGGAGAAGGTATTAGCGATGGAAATCTTGGTGGCGGTGTGCATAGAGTTGGAACCTTATCTAGTTCAGAGATGGATGCATTCCTCCCCAAGGCATTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAAACATGCTGTTCTAGTCACCAAGCAGGGAGAGATATTTAGTTGGGGGGAGGAGTCAGGAGGTAGGCTTGGGCACGGTGTAGAAGTTGACGTTTTACACCCTAAGCTCATCGACACTCTTAGTGGCATCAATATTGAGTTAGTTGCATGTGGAGAATATCATACTTGTGCTGTCACATATTCTGGGGATCTTTATACCTGGGGCGATGGTACATACAATTATGGCTTGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACATGGAGGGTTTACGTGTATCATATGTGTCCTGTGGACCTTGGCATACAGCTGTTATTACATCAACTGGGCAGTTGTTTACATTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGTAGCACAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACTAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCTGTGGAATCTTCCACACAGTCATCTAGTGGAAGACTGTTCACCTGGGGCGATGGAGATAAAAGCCAACTAGGACATGTTGATAGGGAACCTAGACTGATTCCTGAGCCTGTAATTGCATTGGGTAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTCTTACAATCGCTTTGACAACATCAGGACATGTATATACAATGGGAAGTACAGCTTATGGACAACTTGGCTGTCCTGCAGCTGATGGGAAAGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAGGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTCGAATGGGCAATTAGGTCACGGAAACAATGATAACAGGAATAAACCCACACTTGTCGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTTGTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATATCAAGTGTTGATCATTCTGCATGTTCTGGTTGTCGTAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCATGCACCAGCAGGAAATCTATAAAAGCTTCCCTTGCTCCAAATTCCAACAAGCCATATCGGGTTTGTGATGACTGTTATTATAAACTTAAGAAAGCTGCTGAATCAGTATCCATGGTGCAAACTCCTAGCTTGAGAACTGTAAGTTTGCAAGACAGTATGACCACTAAAATACAGGGAAAGCTATTAAGGCTTTCATCTTTTGGTTCTGTTGTTCAAGCAGAAAGCAGTAACTTGAAGCTTCCAGAATCATATGATAGTCATCTTTTTCCAGCTTTGAATGGAAAATTACAACTGGGGGGTTTTGTTCCTTCAAAATCATCAAATTCTCTTTCTGGGGAATCTAGGAAACACCTTTCAGTTTCTGAGCCTCCAACAAGAATATCTTGTCAATCAACATCTCCAGTTTCATCGAAGTCAAGCCCACGACAATCTTATGAAGATACACATGATGATTTAAAGCACAGAAATGACATTCTAAGTCAAGAAGTTATAAGTTTAAGGGCACAGGTTGAAGATCTTACTTGTAAGTCAAAAAGTCTTGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTCATAAAGTCATTGACTGCTCAGTTGAAGGAAATGGTGCAAAGACTGCCAGAAGGACATAATGCTGACTCCAGCACAGATTCCTATGCTGCAACTCCCAATAGTATTCTAGACCAGTCCTTAGATGGGAGCCATATAATGACCACTATCATTCCCAGAAGCGAAGGCAGCAGCAATGCAGAAAGTCTGATATTGCCTAATGGTGTCAAAATACAAAGTGGAAAGGCAGAGTGGGTGGTGCATGATGAACCAGGTGTGTACATAAGTTTGTCCCCCCAGCCTGGTGGTGGTAATGAACTCAAGCGTGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAACAAGCTGAAAAGTGGTGGGCTGAAAATGGAGCCAAAGTATTGGAACGGCACAATGTAGTTGCCTTATAG | 3054 | 0.4191 | MADSQKTGVGDNRDIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLVWYSGKEEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVTRGNYRKWRFESRSESLCSDSPKSSTQRSTPSNTPFDPGDNNGVSFENSSQNRWVKAFSEIISYTAASKSPSQAESIANSSLSSSSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDALGDIFIWGEGISDGNLGGGVHRVGTLSSSEMDAFLPKALESKVVLDVHSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGVEVDVLHPKLIDTLSGINIELVACGEYHTCAVTYSGDLYTWGDGTYNYGLLGHGNEVSHWIPKKVSGNMEGLRVSYVSCGPWHTAVITSTGQLFTFGDGTFGALGHGDHSSTNIPREVETLKGLRTTRVSCGVWHTAAVVEVINESVESSTQSSSGRLFTWGDGDKSQLGHVDREPRLIPEPVIALGNENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPAADGKVPTRVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGSNGQLGHGNNDNRNKPTLVEFLKDKQVKSVVCGSNFTAVVCLHKWISSVDHSACSGCRNPFNFRRKRHNCYNCGLVFCKSCTSRKSIKASLAPNSNKPYRVCDDCYYKLKKAAESVSMVQTPSLRTVSLQDSMTTKIQGKLLRLSSFGSVVQAESSNLKLPESYDSHLFPALNGKLQLGGFVPSKSSNSLSGESRKHLSVSEPPTRISCQSTSPVSSKSSPRQSYEDTHDDLKHRNDILSQEVISLRAQVEDLTCKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMVQRLPEGHNADSSTDSYAATPNSILDQSLDGSHIMTTIIPRSEGSSNAESLILPNGVKIQSGKAEWVVHDEPGVYISLSPQPGGGNELKRVRFSRRHFTEEQAEKWWAENGAKVLERHNVVAL* | 1018 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g02597 | 1017 | Coils | Coil | 814 | 869 | - | - | |
| Rops2g02597 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 58 | 892 | - | - | |
| Rops2g02597 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 401 | 411 | IPR000408 | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | BRX domain profile. | 958 | 1013 | IPR013591 | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 308 | 359 | IPR000408 | - | |
| Rops2g02597 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 585 | 632 | IPR000408 | - | |
| Rops2g02597 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 308 | 356 | IPR000408 | - | |
| Rops2g02597 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 531 | 580 | IPR000408 | - | |
| Rops2g02597 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 479 | 528 | IPR000408 | - | |
| Rops2g02597 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 359 | 411 | IPR000408 | - | |
| Rops2g02597 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 415 | 463 | IPR000408 | - | |
| Rops2g02597 | 1017 | SMART | fyve_4 | 632 | 703 | IPR000306 | GO:0046872 | |
| Rops2g02597 | 1017 | Gene3D | - | 474 | 647 | IPR009091 | - | |
| Rops2g02597 | 1017 | Pfam | Transcription factor BRX N-terminal domain | 872 | 900 | IPR027988 | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 415 | 466 | IPR000408 | - | |
| Rops2g02597 | 1017 | SUPERFAMILY | PH domain-like | 14 | 122 | - | - | |
| Rops2g02597 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 636 | 712 | IPR011011 | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 640 | 702 | IPR017455 | - | |
| Rops2g02597 | 1017 | MobiDBLite | consensus disorder prediction | 139 | 167 | - | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 532 | 583 | IPR000408 | - | |
| Rops2g02597 | 1017 | MobiDBLite | consensus disorder prediction | 777 | 826 | - | - | |
| Rops2g02597 | 1017 | Pfam | FYVE zinc finger | 636 | 702 | IPR000306 | GO:0046872 | |
| Rops2g02597 | 1017 | Coils | Coil | 877 | 897 | - | - | |
| Rops2g02597 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 521 | 539 | IPR000408 | - | |
| Rops2g02597 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 579 | 600 | IPR000408 | - | |
| Rops2g02597 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 360 | 376 | IPR000408 | - | |
| Rops2g02597 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 417 | 431 | IPR000408 | - | |
| Rops2g02597 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 310 | 326 | IPR000408 | - | |
| Rops2g02597 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 401 | 417 | IPR000408 | - | |
| Rops2g02597 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 294 | 304 | IPR000408 | - | |
| Rops2g02597 | 1017 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 217 | 468 | - | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 246 | 307 | IPR000408 | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 584 | 635 | IPR000408 | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 360 | 414 | IPR000408 | - | |
| Rops2g02597 | 1017 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 957 | 1012 | IPR013591 | - | |
| Rops2g02597 | 1017 | Gene3D | - | 14 | 129 | IPR011993 | - | |
| Rops2g02597 | 1017 | MobiDBLite | consensus disorder prediction | 138 | 167 | - | - | |
| Rops2g02597 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 480 | 531 | IPR000408 | - | |
| Rops2g02597 | 1017 | MobiDBLite | consensus disorder prediction | 777 | 814 | - | - | |
| Rops2g02597 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 648 | 709 | IPR013083 | - | |
| Rops2g02597 | 1017 | Pfam | Pleckstrin homology domain | 16 | 122 | IPR001849 | - | |
| Rops2g02597 | 1017 | CDD | PH_PLC_plant-like | 13 | 123 | - | - | |
| Rops2g02597 | 1017 | SUPERFAMILY | RCC1/BLIP-II | 245 | 637 | IPR009091 | - | |
| Rops2g02597 | 1017 | Gene3D | - | 370 | 473 | IPR009091 | - | |
| Rops2g02597 | 1017 | Gene3D | - | 168 | 369 | IPR009091 | - | |
| Rops2g02597 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 453 | 463 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops2g02597 | Rops-Chr2 | 42900187 | 42912977 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops2g02597 | 874 | 1014 | Major Intrinsic Protein MIP | AT1G31880 | 30.508 | 4.97e-14 | 73.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops2g02597 | - | - | pvu:PHAVU_003G066900g | 1443.71 |