Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02596 ATGTTATATTCGATCATGGAAGGTGATCATCAAAATGGGATCAGCAGACCCAATTTTCCATTGCAACTGTTAGAGAAAAAAGATGATCAACAACACCACAACCAACAACAACTTCAACCACAACAACTACCCAACACCACCACCGCACACGACCGCGCCGGTAAGAAGACACCACCGAAGCGGACCACGACGAAGGACAGGCACACGAAGGTGGAGGGTCGCGGCCGCCGGATCCGCATGCCGGCTGCCTGCGCCGCCAGAGTGTTCCAACTGACTCGGGAGCTCGGCCACAAGTCCGACGGCGAAACCATAGAGTGGCTTCTTCGGCAGGCTGAGCCCGCCGTGATCGCCGCCACCGGTACCGGAACCATTCCCGCCAACTTCACTTCCCTCAACATCTCGCAACGCAGCTCCGGCTCCACCCTTTCATCTCACTACTTCAGAAGCAATAACAACAACAACAACTTCAACCCCATCACAAGCTTTAGCTTCTCCTCCGCCACGAGGAACTGGGACAGAACCGCGGTTCTTGAAGATTCTAGAAGGGTCTTCTTCCCCGGGTTGCATTTACCTTCCTCGGAAAACTCTTCAGTGTCTTCTCTTTTGAATTTCAACCATGGTGGTACATTGAATACTGTTCCACTAGCCAAGCAAGAGCTTCAAGAAGAATATGTCGCCGCCGCCACCAAGGAAGGTTTAGGAAGGAACAGAAGGGAAGAACAAGAGATGTCACATAGTGAGATGGGAAGTTATTTGTCACAATCAAGTACTGGCTCTATTCCAGCAAGTCATGCTTCAATTCCGGCAACTTTTTGGATGATGAACGGTGGTGGTGTTAGTGGTGGTGATGGTGATCCCATTTGGGCAATTTCATCTAATGGGAATTGTAATGGTAGCATGTATAAAGGTGTCATGCCTCCTAGTGCTGCTGGCATTCATTTTATGAATTTTGCTTCTCCAATGTCTCTATTGCCTGGTTCTGGTGGTGGTGGTGGTGCATTGGTAACTGAAAGCAACTTAGGTATGTTTGCAGCCCTTAATGCTTATAGACCTATTTTGGCCGCCGGTGGTGGCGTTCCAGAGTCTCCGGCCGGGGAACATCCAAATCATGGAGGAGATGAGGGAGATGAAACAACTAATTAA 1143 0.4978 MLYSIMEGDHQNGISRPNFPLQLLEKKDDQQHHNQQQLQPQQLPNTTTAHDRAGKKTPPKRTTTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLRQAEPAVIAATGTGTIPANFTSLNISQRSSGSTLSSHYFRSNNNNNNFNPITSFSFSSATRNWDRTAVLEDSRRVFFPGLHLPSSENSSVSSLLNFNHGGTLNTVPLAKQELQEEYVAAATKEGLGRNRREEQEMSHSEMGSYLSQSSTGSIPASHASIPATFWMMNGGGVSGGDGDPIWAISSNGNCNGSMYKGVMPPSAAGIHFMNFASPMSLLPGSGGGGGALVTESNLGMFAALNAYRPILAAGGGVPESPAGEHPNHGGDEGDETTN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02596 380 ProSiteProfiles TCP domain profile. 64 118 IPR017887 -
Rops2g02596 380 MobiDBLite consensus disorder prediction 34 52 - -
Rops2g02596 380 Pfam TCP family transcription factor 62 247 IPR017887 -
Rops2g02596 380 MobiDBLite consensus disorder prediction 27 78 - -
Rops2g02596 380 MobiDBLite consensus disorder prediction 356 380 - -
Rops2g02596 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 343 IPR005333 GO:0003700
Rops2g02596 380 MobiDBLite consensus disorder prediction 53 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02596 Rops-Chr2 42888509 42890100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02596 218 356 TCP Transcription Factor Family AT1G69690 33.553 6.69e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops2g02596 TCP 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02596 - - adu:107489244 341.658