Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02579 ATGGAACAGAGAAATGATGGTGAGAAACTTGATGAGGTTATGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGATTTTACCTAAAGAGAAAGATTCAGCGGCGTTCTCTGTCTATTGAACTCATCAAGCAGCTTGATATATATAAATATGATCCTTGGGATCTTCCAAAGCTGGCCAGTACTGGGGAGAAAGAATGGTATTTTTACTGTCCAAGAGACAGGAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACAGGGGCTGGGTTTTGGAAAGCTACAGGAACTGACAGGCCTATCTACTCCTCAGAGGGTTCCAAGTGTATTGGCCTGAAGAAATCCCTAGTGTTCTACAAAGGTAGAGCTGCCAAAGGGGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTATCACAGGCTCATCATCATCCCCCAAGAAGTACATAGACAACACCATTCCAGCTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAATCAATGCTACAGCTCAAAGAGCTCTCTCTCACTCTTGGGTCCCTCCCTTACCTGAAACAACCACCTCTGATATGCTAACCAATGATGGAGATGGCAACCAATCTTGTTCAGCAAACATGTCATTGACAAAGAAACCAAACTTAGCCAGCCAGTTTTGTACTATTAACCATGACACACAACACTTAACCACTGCTAATAGTACTCTTTGCCCTTTGAATGTTGCCTCTTATAATAAACTCATTGTTAATCCATTGCTTTCCAAACCGTTTGATCGGATACCCATTTCAAATGGAGACCTTAGCAATGGCTCAATATTCTCATCTCCTCTTGAAACTTCCACAACTAATACTAAATCTTCAATGGATGTTTCTTCCTTGCTATTGAGTATGTCATCTTCTGTGCTTGGAGATTTTGGTAAGACCTCTGAGGGAACAACCTCAAACTTTGGTGGGTTACAAGAGCACAGTAACTGCTACCCAATACCATTACTGCGTGAAATGCAAGGGACCATTGGAAACCAAGATGATAATGTAATGGTAAAAATTCCTAATGTGAATGTGCCTCACGTTGATGAACAACAACTGGAGACAGTAAGATCCATTGGGTTTCCATTCAGTGTGCCTTTCAATATTGGAGATGCATGGAAGTTTAATCTGCTTTGGGATGCTTCTTCTAGTCCTTGTGATGCGCCCTCTAGTTATTCTACAACCAAGTCTTATACTTAG 1245 0.4169 MEQRNDGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQRRSLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSITGSSSSPKKYIDNTIPANESWAICRIFKKINATAQRALSHSWVPPLPETTTSDMLTNDGDGNQSCSANMSLTKKPNLASQFCTINHDTQHLTTANSTLCPLNVASYNKLIVNPLLSKPFDRIPISNGDLSNGSIFSSPLETSTTNTKSSMDVSSLLLSMSSSVLGDFGKTSEGTTSNFGGLQEHSNCYPIPLLREMQGTIGNQDDNVMVKIPNVNVPHVDEQQLETVRSIGFPFSVPFNIGDAWKFNLLWDASSSPCDAPSSYSTTKSYT* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02579 414 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Rops2g02579 414 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
Rops2g02579 414 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 239 - -
Rops2g02579 414 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Rops2g02579 414 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Rops2g02579 414 FunFam NAC domain-containing protein 35 23 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02579 Rops-Chr2 42492986 42495259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02579 2 376 NAC Transcription Factor Family AT1G26870 49.100 5.55e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g02579 NAM 7.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02579 - - vra:106768003 609.757