Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02571 ATGGACTTGACCTCCAGCAATACCCTCAACTTAGATGCAGATCCTCAAACCACACCACCAACCCAACCCACCAACACAAACACCTCAAAGTCTTTATCTTTCACCAACGGCACACTCAAGTGCCACCCTATTAACACTGCTCCGCCGCCACAACCACCGTCCATGGTGGTTTCTTACAAGGAATGTCTCAAGAACCATGCTGCCAGCATAGGTGGCCATGCACTTGATGGTTGTGGTGAATTCATGCCCTCATCTTCCACCAACCCAAATGACCCTCGATCTCTCAAATGTGCAGCATGTGGTTGCCATCGCAACTTCCACCGCCGAGACCCTCAAGAACACACCACCACCATCGCCAACAACAACAACAACCCCACCTTTATAAGTTGCATCTACTCCTCTTCAGCCACAGCAACAGCACCACCACCACCGCAACCACTACGACAACCACCACTACCTCACCGTGCCATAAGCCAAAGCACAAGCCCAAGCCTAAGTTCTAGCCCAAGCCACAGTCCAAGCCCATTATCAAGCCCATCCCCACCACCACTCTCTCATTTGCCACCTTCTTATCACACTTCAGCACCCCACATGCTCTTAGCCCTTGGCACTGCCTATTCAGCACCATCCACTGATGAGCATCACAGGAATCTCAAATTCTCAGTGGTGAAAACTGAGAACCCAAGTGGGAAAAAAAGGTACAGAACGAAATTCAGCAAGGAGCAGAAGGAGAAGATGTATAGCTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGAAATTCTGCAATGACATCGGTATCTCTAGAGGGGTCTTCAAGGTTTGGATGCACAATAATAAGAATACCTTTAGGAAGAGATCAGAAGTGGGAAATGCTCCTCAAAATGAAAAGATCAATGGGAATGATGATGATGGCAATGGTGATGGAGGTGGTGTTGGATTTGATAGTGATATTAACAACCCCTACAACCCAAATAGTAACAACAATGACATTCACATGAATGAAGATAGCTGCGTCAATGTTCATGTTTCTATTAATGGGTTGTCTTCTTAA 1074 0.4693 MDLTSSNTLNLDADPQTTPPTQPTNTNTSKSLSFTNGTLKCHPINTAPPPQPPSMVVSYKECLKNHAASIGGHALDGCGEFMPSSSTNPNDPRSLKCAACGCHRNFHRRDPQEHTTTIANNNNNPTFISCIYSSSATATAPPPPQPLRQPPLPHRAISQSTSPSLSSSPSHSPSPLSSPSPPPLSHLPPSYHTSAPHMLLALGTAYSAPSTDEHHRNLKFSVVKTENPSGKKRYRTKFSKEQKEKMYSFSEKLGWRMQKGDDGLVQKFCNDIGISRGVFKVWMHNNKNTFRKRSEVGNAPQNEKINGNDDDGNGDGGGVGFDSDINNPYNPNSNNNDIHMNEDSCVNVHVSINGLSS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02571 357 MobiDBLite consensus disorder prediction 154 173 - -
Rops2g02571 357 MobiDBLite consensus disorder prediction 292 307 - -
Rops2g02571 357 FunFam Zinc-finger homeodomain protein 2 220 292 - -
Rops2g02571 357 MobiDBLite consensus disorder prediction 135 191 - -
Rops2g02571 357 MobiDBLite consensus disorder prediction 292 332 - -
Rops2g02571 357 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Rops2g02571 357 NCBIfam homeobox domain, ZF-HD class 231 288 IPR006455 -
Rops2g02571 357 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Rops2g02571 357 MobiDBLite consensus disorder prediction 1 33 - -
Rops2g02571 357 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 289 - -
Rops2g02571 357 MobiDBLite consensus disorder prediction 174 189 - -
Rops2g02571 357 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Rops2g02571 357 SUPERFAMILY Homeodomain-like 226 292 IPR009057 -
Rops2g02571 357 Gene3D - 221 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02571 Rops-Chr2 42348006 42349528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02571 55 290 ZF-HD Transcription Factor Family AT1G69600 46.473 4.72e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops2g02571 ZF-HD_dimer 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02571 - - vum:124843063 435.261