Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02570 ATGAGCGATCACCTGGTGCTGTTCGTGGACCGTCTGGTGCGTCCAGCGCCGGTTGAGGCGATGGCTCAACACCCGATCCAGCCCGCTCCTGAACCGTCGACGCCGGTGGATGAGGCGGCGGCGGGACCTTCAGGTTTTTCTCCGGTGGCGGAGGATGACGGCGACGGGGAGGAGGAGCCGCTGATTCAGATGGTGGAGTGTCGCATTTGTCAGGAGGAGGACAGCGTCAACAATCTGGAGACTCCTTGTGCTTGCAGAGGCAGCCTTAAGTATGCTCACAGAAAGTGCGTCCAACATTGGTGCAACGAGAAAGGAGACATAACTTGTGAGATATGTCATAAGCCCTATGAACCTGGTTATACTGCCCCACCACCCCGTCCAAATCCCGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACACCTTTGGACTTACATGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTTTTGGAAGCTGAATATGATGGATACGCTGCCTCTAATGCCAGCGGAGCTGCATTTTGCCGTTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCATGCTCTTTCTGTCACGCATGCTGATGCTGAAGATGATCCATCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTACAACGTCGGCGACAAAGACAAGAGGCGGCAGCACTAGCGGCAACCCAAGTTGCTTTCGTTCTACAATCTGGGCAGCGTAGGGGTCTGCAGTTTGCAATAACACCAGGACCAACACCGAACACGCACCAGGAACAAGTGTAG 858 0.521 MSDHLVLFVDRLVRPAPVEAMAQHPIQPAPEPSTPVDEAAAGPSGFSPVAEDDGDGEEEPLIQMVECRICQEEDSVNNLETPCACRGSLKYAHRKCVQHWCNEKGDITCEICHKPYEPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLHDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTHADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAITPGPTPNTHQEQV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02570 285 MobiDBLite consensus disorder prediction 25 56 - -
Rops2g02570 285 Coils Coil 155 175 - -
Rops2g02570 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 121 IPR013083 -
Rops2g02570 285 ProSiteProfiles Zinc finger RING-CH-type profile. 59 119 IPR011016 GO:0008270
Rops2g02570 285 SUPERFAMILY RING/U-box 65 117 - -
Rops2g02570 285 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 246 IPR033275 -
Rops2g02570 285 Pfam Protein of unknown function (DUF3675) 118 236 IPR022143 -
Rops2g02570 285 CDD RING_CH-C4HC3_MARCH 67 113 - -
Rops2g02570 285 SMART ringv_2 66 113 IPR011016 GO:0008270
Rops2g02570 285 FunFam RING/FYVE/PHD zinc finger protein 55 123 - -
Rops2g02570 285 Pfam RING-variant domain 67 112 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02570 Rops-Chr2 42329393 42332442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02570 66 142 C3H Transcription Factor Family AT2G37950 35.955 6.17e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02570 - - ahf:112734090 465.307