Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02561 ATGGATATGCAAAATGTGCAAAATCAGAGTATGCGTTTGGTTCTTTCCACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGATTCACTGAGGCAATTAATCAGCTTGGAGGTCCAGAAAAGGCAACTCCAAAGAGTCTTATGAGGGTCATGGAGGTTCCAGGACTCACTTTGTTCCACCTCAAAAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAGCTAGAAACCTGCTCTGACAACAAACAACAAGATTACAGAGAAATCCAGAGCAGTGATGGTCATAGCAGCAGGGAAATCAGTATTGGGACCCAGAATCAGATGACTGAAAGCTTGAAGATTGCTCAGTCTCTTCAAATGCAAATGGAAGTACAAAGGAAACTTCATGAACAAATTGAGGTGCAGAGACATTTGCAGCTTCGAATTGAAGCACAAGGGAAGTACTTACAATCAGTACTAATGAAGGCACAGGAAGCACTTGGAGGATACAGTTCTTCATCAATGGGTGTAGAACATGCAAAAGCTGAACTTTCTCAGCTATTATCAATAATCAACAATGCATGCCCAAGTTCTCCAATTTCAGAACTGACGGAAACAAGAGGGTTCAGTTTAAACAGTGGGGAGAGGAAACAAAACAGAGGAACTATGTGTTCACTGGAAAGTTCTCTGACATCATCAGAGAGCTCTGGGAGAAATGATGATAAACAGCCCATGTATGAGGCAGAGAACCCTCAAAAGTGTAATAGTGTTTCAGTTGAATTGCCATTAATGACCATTCACCCAGAAGATAAAGCATTCAAGGAAGGTGCAAGTGATGGAGCTAGTGGGACAAAAAGAAGTGCAGCAATTGATTCTGATGGTAGCTGTGTTGATCAACCATCTGTTAAAAGATGTGGCAACAAGTTGAGGAAATTGTCAGAAATGCTTGACTTGAACAGCCAATATGAGAGAGACAGTGACTCAAGTTCAAAAGAAATAGATTTAAATTGCAGTTCAAGCTTTTGGGAACAATGA 1029 0.413 MDMQNVQNQSMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGPEKATPKSLMRVMEVPGLTLFHLKSHLQKYRLGKSQQLETCSDNKQQDYREIQSSDGHSSREISIGTQNQMTESLKIAQSLQMQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLMKAQEALGGYSSSSMGVEHAKAELSQLLSIINNACPSSPISELTETRGFSLNSGERKQNRGTMCSLESSLTSSESSGRNDDKQPMYEAENPQKCNSVSVELPLMTIHPEDKAFKEGASDGASGTKRSAAIDSDGSCVDQPSVKRCGNKLRKLSEMLDLNSQYERDSDSSSKEIDLNCSSSFWEQ* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02561 342 MobiDBLite consensus disorder prediction 271 300 - -
Rops2g02561 342 MobiDBLite consensus disorder prediction 207 252 - -
Rops2g02561 342 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Rops2g02561 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Rops2g02561 342 Pfam MYB-CC type transfactor, LHEQLE motif 118 163 IPR025756 -
Rops2g02561 342 MobiDBLite consensus disorder prediction 318 342 - -
Rops2g02561 342 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Rops2g02561 342 FunFam Myb family transcription factor 19 77 - -
Rops2g02561 342 Gene3D - 19 77 - -
Rops2g02561 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 262 IPR044848 GO:0003700
Rops2g02561 342 MobiDBLite consensus disorder prediction 207 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02561 Rops-Chr2 42180826 42182790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02561 11 302 G2-like Transcription Factor Family AT1G69580 50.164 4.50e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops2g02561 Myb_CC_LHEQLE 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02561 - - gmx:100776601 488.419